Prototype cleanup 1

docs/Components/hopper.md

@@ -6,13 +6,18 @@
 
 <a id="module-Components.hopper"></a>
 
-### Components.hopper.get(url: str, params=None)
+### Components.hopper.downloadFile(url, text=True, mimeType=None)
+
+Download resource from url and convert it to text or a data url
+
+### Components.hopper.get(url: str, params=None, followTags=None)
 
 http/s get request
 
 * **Parameters:**
   * **url** (*str*)
   * **params** – Requests (library) parameters
+  * **followTags** – None or list of tags to download the src/href from
 
 ### Components.hopper.post(url: str, params=None)
 

docs/Config/Context.md

@@ -0,0 +1,16 @@
+<a id="context"></a>
+
+# Context
+
+### *class* Config.Context.Context(subsets: dict = {}, \*\*kwargs)
+
+Generic context data structure, current subclassed for use in filters, see Sponge/Protocols/Yellow.py
+
+[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Config/Context.py)
+
+#### ctx
+
+Dictionary of context values
+
+* **Type:**
+  dict

docs/Cryptography/WhaleSong.md

@@ -1,22 +1,11 @@
-<a id="whalesong-diffie-hellman-ephemeral-fernet-based-encryption"></a>
+<a id="whalesong"></a>
 
-# WhaleSong: Diffie hellman ephemeral Fernet based encryption
+# WhaleSong
 
-### *class* Cryptography.WhaleSong.DHEFern(cache, nodeNickname, cLog)
+### *class* Cryptography.WhaleSong.Transport(cache, nodeNickname, daisyCryptography, psk)
 
 [🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Cryptography/WhaleSong.py)
 
-#### cLog
-
-Method reference to run.Node.cLog so we can log to the ui from here
-
-#### loadedParams
-
-In memory representations of cryptography parameters
-
-* **Type:**
-  dict
-
 #### loadedKeys
 
 In memory representations of cryptography keys
@@ -36,7 +25,7 @@ Name of node for isolating configs when running multiple nodes
 Daisy cache for use in storing cryptography information
 
 * **Type:**
-  Components.daisy.Cache
+  [Daisy.Cache.Cache](/PierMesh/piermesh/src/branch/main/docs/Daisy/Cache.md#Daisy.Cache.Cache)
 
 #### publicKey
 
@@ -46,20 +35,52 @@ Public key for node
 
 Private key for node
 
-#### checkInMem(store: str, nodeID: str)
+#### daisyCryptography
 
-Check if parameters or keys are loaded for node of nodeID
+Record cryptography reference
 
-* **Parameters:**
-  **store** (*str*) – Whether to check loaded keys or parameters
+* **Type:**
+  [Daisy.CryptographyUtil.SteelPetal](/PierMesh/piermesh/src/branch/main/docs/Daisy/CryptographyUtil.md#Daisy.CryptographyUtil.SteelPetal)
 
-#### decrypt(data, nodeID: str)
+#### addPeerEphemeralKey(onodeID, peerEphemeralKey: bytes)
 
-Decrypt bytes and return either str or dict (TODO: Check whether to msgpack load)
+Add a peer node’s epehemeral key for session encryption
 
-#### encrypt(data, nodeID: str, isDict: bool = True)
+onodeID
+: Node identifier
 
-Do Fernet encryption
+peerEphemeralKey: bytes
+: Serialized ephemeral key
+
+#### addPublickey(onodeID, publicKey, forSelf: bool = False)
+
+Add a public key for a given node including this one
+
+onodeID
+: Node identifier
+
+publicKey
+: Public key to add
+
+forSelf: bool
+: Whether to add key for this node
+
+#### decrypt(data, onodeID: str, nonce, tag)
+
+Decrypt bytes and return either str or dict depending on result
+
+onodeID: str
+: Node identifier
+
+nonce
+: Encryption nonce
+
+tag
+: Encryption tag
+
+#### encrypt(data, nodeID: str, isDict: bool = True, pskEncrypt=False)
+
+Encrypt given data with AES GCM
 
 data
 : Either bytes or dict to encrypt
@@ -67,53 +88,42 @@ data
 isDict: bool
 : Whether data is a dictionary
 
-#### genKeyPair(paramsOverride=False, setSelf: bool = True)
+pskEncrypt: bool
+: Whether to encrypt with pre-shared key
 
-Generate public and private keys from self.params (TODO: Gen from passed params)
+#### genOurEphemeralKey(onodeID)
 
-paramsOverride
-: False or parameters to use (TODO)
+Generate epehemeral key for session encryption with given node
 
-setSelf: bool
-: Whether to set self.privateKey and self.publicKey
+#### genStaticKey(onodeID)
 
-#### genParams()
+Generate static key for session encryption with given node
 
-Generate Diffie Hellman parameters
+#### generateSessionKey(onodeID)
 
-#### getParamsBytes()
+Generate session key for transport encryption
 
-Get bytes encoded from self.parameters (TODO: Encode from store)
+onodeID
+: Node identifier
 
-#### getRecord(store: str, key: str)
+#### getRecord(store: str, key: str, ephemeral=False)
 
 Get record from store: store with key: key
 
-#### getSalt()
-
-Get random salt
-
 #### initStore(store: str)
 
 Initialize store: store
 
-#### keyDerive(pubKey: bytes, salt: bytes, nodeID: str, params: bytes)
+#### kdf(bytesX)
 
-Derive shared key using Diffie Hellman
+Key derivation function
 
-pubKey: bytes
-: Public key
+#### sessionSetup(onodeID, peerEphemeralKey: bytes)
 
-nodeID: str
-: PierMesh node ID
+Set up transport encryption session
 
-params: bytes
-: Encryption parameters
+onodeID
+: Node identifier
 
-#### loadParamBytes(pemBytes: bytes)
-
-Load parameters to self.params from given bytes (TODO: Load from store)
-
-#### loadRecordToMem(store: str, nodeID: str)
-
-Load record of nodeID from store to either keys or pameters
+peerEphemeralKey: bytes
+: Serialized ephemeral key

docs/Daisy/Cache.md

@@ -2,19 +2,20 @@
 
 # Daisy based cache
 
-### *class* Daisy.Cache.Cache(filepaths=None, cacheFile=None, path: str = 'daisy', walk: bool = False, isCatch: bool = False)
+### *class* Daisy.Cache.Cache(daisyCryptography, filepaths=None, cacheFile=None, path: str = 'daisy', walk: bool = False)
 
-In memory collection of Daisy records
+In memory collection of Daisy records, provides a search functionality currently utilized by Daisy.Catch.Catch
 
 [🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Daisy/Cache.py)
 
-#### create(path: str, data: dict)
+#### create(path: str, data: dict, remote=False)
 
 Create new record
 
 * **Parameters:**
   * **path** (*str*) – Path to create record at
   * **data** (*dict*) – Data to populate record with
+  * **remote** (*bool*) – Whether this is a reference to a distributed file (not implemented yet)
 
 #### get(path: str)
 
@@ -29,10 +30,10 @@ Reload from disk to memory
 
 #### search(keydict: dict, strict: bool = True)
 
-Search cache for record for records with values
+Search cache for record for records with keys and values matching those
+in the keydict
 
 keydict: dict
-: Values to search for
 
 strict: bool
-: Whether to require values match
+: Whether to require all keys/values match

docs/Daisy/Catch.md

@@ -2,7 +2,7 @@
 
 # Daisy Catch cache
 
-### *class* Daisy.Catch.Catch(path: str = 'catch', filepaths=None, catchFile=None, walk: bool = False)
+### *class* Daisy.Catch.Catch(daisyCryptography, path: str = 'catch', filepaths=None, catchFile=None, walk: bool = False)
 
 Sub class of Cache for handling catchs
 
@@ -10,7 +10,7 @@ Sub class of Cache for handling catchs
 
 [🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Daisy/Catch.py)
 
-#### get(head: str, tail: str, fins=None)
+#### get(head: str, body: str, fins=None)
 
 Get catch by pieces
 

docs/Daisy/Credential.md

@@ -0,0 +1,7 @@
+<a id="credential"></a>
+
+# Credential
+
+### *class* Daisy.Credential.Credential(nodeNickname, credentialName, extension, daisyCryptography)
+
+Currently unused credential class, will be fleshed out for credentialed access to the web ui

docs/Daisy/CryptographyUtil.md

@@ -0,0 +1,28 @@
+<a id="cryptographyutil"></a>
+
+# CryptographyUtil
+
+### *class* Daisy.CryptographyUtil.SteelPetal(key: str, nonce=None, testData=None)
+
+Cryptography utility for encrypting files
+
+#### decrypt(data: bytes)
+
+Decrypt encrypted binary data
+
+data: bytes
+: Data to decrypt
+
+#### encrypt(data: bytes)
+
+Encrypt binary data
+
+data: bytes
+: Data to encrypt
+
+#### pad(key: str)
+
+Pad key to make it usable
+
+key: str
+: User’s plain text key

docs/Daisy/Daisy.md

@@ -4,7 +4,7 @@
 
 # Daisy
 
-### *class* Daisy.Daisy.Daisy(filepath: str, templates: dict = {}, template: bool = False, prefillDict: bool = False)
+### *class* Daisy.Daisy.Daisy(filepath: str, daisyCryptography, templates: dict = {}, template: bool = False, prefillDict: bool = False, remote=False)
 
 Base class for Daisy data representation
 
@@ -33,6 +33,13 @@ Get record dictionary from memory
 * **Return type:**
   dict
 
+#### json_to_msg(path: str)
+
+Convert json at the path plus .json to a msgpack binary
+
+* **Parameters:**
+  **path** (*str*) – Path to json minus the extension
+
 #### read(decrypt: bool = False, decryptKey=False)
 
 Read record from disk to memory
@@ -47,7 +54,7 @@ Lists contents of directory if object is a directory, otherwise return None
 
 #### write(override=False, encrypt: bool = False, encryptKey=None, recur: bool = False)
 
-Write record to disk
+Write record to disk, note: use override with updated record to update record
 
 * **Parameters:**
   * **override** – Either false or a dictionary of values to set on the record

docs/Daisy/Index.md

@@ -0,0 +1,25 @@
+<a id="index"></a>
+
+# Index
+
+### *class* Daisy.Index.Index(nodeNickname: str, daisyCryptography, prefill: list = [], indexedFields: list = [], autoIndex: bool = True)
+
+A searchable index of records, this is currently only half implemented
+but works enough to hold our remote catch index
+
+#### addEntry(entry: dict)
+
+Add a record to the index
+
+entry: dict
+: Record to add to the index
+
+#### search(keydict: dict, strict: bool = True)
+
+Search index for record for records with values
+
+keydict: dict
+: Keys/Values to search for
+
+strict: bool
+: Whether to require all keys/values match

docs/Daisy/Ref.md

@@ -0,0 +1,13 @@
+<a id="ref"></a>
+
+# Ref
+
+### *class* Daisy.Ref.Ref(metadata: dict, path: str, remoteNodeID: str)
+
+Reference to a remote record
+
+metadata: dict
+: Data to fill record with, should only be metadata
+
+path: str
+: Where to store data locally

docs/Daisy/Soil.md

@@ -1,16 +0,0 @@
-<a id="soil-daisy-signal-management"></a>
-
-# Soil: Daisy signal management
-
-### *class* Daisy.Soil.Compound(cache, isCatch: bool = False)
-
-File system watcher to propagate disk changes
-
-[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Daisy/Soil.py)
-
-#### on_any_event(event)
-
-Called when a CRUD operation is performed on a record file
-
-* **Parameters:**
-  **event** – Event object provided by watchdog

docs/Daisy/Store.md

@@ -2,12 +2,39 @@
 
 # Store: Daisy key value store
 
-### *class* Daisy.Store.Store(store: str, path: str, nodeNickname: str)
+### *class* Daisy.Store.Store(store: str, path: str, nodeNickname: str, daisyCryptography)
 
 Key value store
 
 [🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Daisy/Store.py)
 
-#### getRecord(key: str)
+#### epehemeral
 
-#### update(entry: str, data, recur: bool = True)
+Memory only records
+
+* **Type:**
+  dict
+
+#### createEmpty(key: str)
+
+* **Parameters:**
+  * **key** (*str*)
+  * **key** – Key to create empty record at
+
+#### getRecord(key: str, ephemeral=False)
+
+Get record at key
+
+* **Parameters:**
+  * **key** (*str*)
+  * **ephemeral** (*bool*) – Whether key is only in memory, used for session cryptography credentials currently
+
+#### update(entry: str, data, recur: bool = True, write=True)
+
+Update given record
+
+* **Parameters:**
+  * **entry** (*str*) – Key to update record of
+  * **data** – Data to update record with
+  * **recur** (*bool*) – Whether to iterate over data
+  * **write** (*bool*) – Whether record is ephemeral

docs/Packets/HeaderPacket.md

@@ -2,7 +2,7 @@
 
 # Header packet: Metadata packet
 
-### *class* Packets.HeaderPacket.Header(packetsID: int, packetCount: int, sender: int, senderDisplayName: int, recipient: int, recipientNode: int, subpacket: bool = False, wantFullResponse: bool = False, packetsClass: int = 0, pAction: int = -1)
+### *class* Packets.HeaderPacket.Header(packetsID: int, packetCount: int, sender: int, senderDisplayName: int, sourceNode: int, recipient: int, recipientNode: int, wantFullResponse: bool = False, packetsClass: int = 0, pAction: int = -1, target=True)
 
 Metadata packet for messages
 
@@ -52,7 +52,7 @@ Whether a response should be sent when the message completes reception (TODO)
 
 #### pAction
 
-3 digit (maximum) pAction ID for mapping precise actions within a protocol (TODO)
+3 digit (maximum) pAction ID for mapping precise actions within a protocol
 
 * **Type:**
   int
@@ -61,6 +61,6 @@ Whether a response should be sent when the message completes reception (TODO)
 
 Dump packet to msgpack encoded binary for transmission
 
-#### usePreset(path: str)
+#### usePreset(path: str, daisyCryptography)
 
-Add preset fields to the packet
+Add preset fields to the packet, currently unused

docs/Packets/Messages/Protocols/bubble/Bubble.md

@@ -0,0 +1,7 @@
+<a id="bubble-bubble"></a>
+
+# bubble.Bubble
+
+### *class* Packets.Messages.Protocols.bubble.Bubble.Bubble(sender, senderID, sourceNode, recipient, recipientNode, cryptographyInfo, data)
+
+Send data from peer to peer

docs/Packets/Messages/Protocols/catch/IndexSync.md

@@ -0,0 +1,7 @@
+<a id="catch-indexsync"></a>
+
+# catch.IndexSync
+
+### *class* Packets.Messages.Protocols.catch.IndexSync.IndexSync(sender, senderID, sourceNode, recipient, recipientNode, cryptographyInfo, index, target=False)
+
+Sync indices of Catchs across nodes

docs/Packets/Messages/Protocols/catch/Request.md

@@ -0,0 +1,7 @@
+<a id="catch-request"></a>
+
+# catch.Request
+
+### *class* Packets.Messages.Protocols.catch.Request.CatchRequest(sender, senderID, sourceNode, recipient, recipientNode, cryptographyInfo, head, body, fins, pskEncrypt=False)
+
+Request Catch (website) from another node

docs/Packets/Messages/Protocols/catch/Response.md

@@ -0,0 +1,7 @@
+<a id="catch-response"></a>
+
+# catch.Response
+
+### *class* Packets.Messages.Protocols.catch.Response.CatchResponse(sender, senderID, sourceNode, recipient, recipientNode, cryptographyInfo, html, pskEncrypt=False)
+
+Send local Catch (website) to user who requested it

docs/Packets/Messages/Protocols/cryptography/Handshake.md

@@ -0,0 +1,7 @@
+<a id="cryptography-handshake"></a>
+
+# cryptography.Handshake
+
+### *class* Packets.Messages.Protocols.cryptography.Handshake.Handshake(sender, senderID, recipient, recipientNode, cryptographyInfo, onodeID, sourceNode)
+
+Provides the ephemeral key for session encryption

docs/Packets/Messages/Protocols/hopper/Request.md

@@ -0,0 +1,7 @@
+<a id="hopper-request"></a>
+
+# hopper.Request
+
+### *class* Packets.Messages.Protocols.hopper.Request.HopperRequest(sender, senderID, sourceNode, recipient, recipientNode, url: str, params: dict, method: str, cryptographyInfo)
+
+Proxy request to main internet from remote node

docs/Packets/Messages/Protocols/hopper/Response.md

@@ -0,0 +1,7 @@
+<a id="hopper-response"></a>
+
+# hopper.Response
+
+### *class* Packets.Messages.Protocols.hopper.Response.HopperResponse(sender, senderID, sourceNode, recipient, recipientNode, response, cryptographyInfo)
+
+Send proxied request back to requester

docs/Packets/Messages/Protocols/map/Announce.md

@@ -0,0 +1,7 @@
+<a id="map-announce"></a>
+
+# map.Announce
+
+### *class* Packets.Messages.Protocols.map.Announce.AnnounceMessage(sender, senderID, sourceNode, cryptographyInfo, mapping)
+
+Announce the network map details and public key of the node for discovery

docs/Packets/Packet.md

@@ -2,7 +2,7 @@
 
 # Packet: Base packet
 
-### *class* Packets.Packet.Packet(data: bytes, packetsID: int = -1, packetNumber=False, packetCount: int = 1, packetsClass: int = -1)
+### *class* Packets.Packet.Packet(data: bytes, packetsID: int = -1, packetNumber=False, packetCount: int = 1, packetsClass: int = -1, primaryMessage=None)
 
 Base class for Packets
 

docs/Packets/SubMessage.md

@@ -2,6 +2,6 @@
 
 # SubMessage: Additional data for larger messages
 
-### *class* Packets.SubMessage.SubMessage
+### *class* Packets.SubMessage.SubMessage(sender, senderID, sourceNode, recipient, recipientNode, cryptographyInfo, protocolID, pAction, data, target=True, primaryMessage=None)
 
-TODO
+SubMessage to a primary message, enables us to send more/dynamic data

docs/Packets/SubPacket.md

@@ -2,6 +2,6 @@
 
 # SubPacket: Packets for submessages
 
-### *class* Packets.SubPacket.SubPacket
+### *class* Packets.SubMessage.SubMessage(sender, senderID, sourceNode, recipient, recipientNode, cryptographyInfo, protocolID, pAction, data, target=True, primaryMessage=None)
 
-TODO
+SubMessage to a primary message, enables us to send more/dynamic data

docs/Services/Action.md

@@ -0,0 +1,59 @@
+<a id="services-action"></a>
+
+# Services.Action
+
+### *class* Services.Action.Action(action, data, sender=None, senderID=None, sourceNode=None, recipient=None, recipientNode=None)
+
+Generic action class for triggering actions from sub processes on the main thread
+
+[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Services/Action.py)
+
+#### action
+
+Action to run
+
+* **Type:**
+  str
+
+#### data
+
+Data to pass to action
+
+* **Type:**
+  dict
+
+#### sender
+
+Sender identifier
+
+* **Type:**
+  str
+
+#### senderID
+
+Sender second level identifier
+
+* **Type:**
+  str
+
+#### sourceNode
+
+Sending node
+
+* **Type:**
+  str
+
+#### recipient
+
+Peer identifier to route to
+
+* **Type:**
+  str
+
+#### recipientNode
+
+Intended destination node identifier
+
+#### getAction()
+
+#### getData()

docs/Siph/map.md

@@ -36,7 +36,7 @@ Map of PierMesh node IDs to MeshTastic node IDs
 * **Type:**
   dict
 
-#### addLookup(onodeID: str, mnodeID: str)
+#### *async* addLookup(onodeID: str, mnodeID: str)
 
 Adds node to lookup
 
@@ -92,3 +92,11 @@ Import map from path
 #### render(pathPrefix: str = '')
 
 Render outer and inner network map to disk at the given path prefix
+
+#### syncaddLookup(onodeID: str, mnodeID: str)
+
+Adds node to lookup
+
+* **Parameters:**
+  * **onodeID** (*str*) – Internal nodeID
+  * **mnodeID** (*str*) – MeshTastic nodeID

docs/Splash/serve.md

@@ -2,22 +2,18 @@
 
 # serve: Web UI server
 
-### *class* Splash.serve.Server(transceiver, catch, onodeID, network, cLog)
+### *class* Splash.serve.Server(transceiver, catch, onodeID, network, cryptographyInfo, remoteCatchIndex, cache)
 
 Web server that serves the web ui and provides web to node communication
 
 [🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/src/Sponge/serve.py)
 
-#### cLog
+#### transceiver
 
-Reference to run.Node.cLog for logging
-
-#### transmitter
-
-Reference to our Transmission.transmission.Transmitter instance
+Reference to our Transceiver.Transceiver.Transceiver instance
 
 * **Type:**
-  Transmission.transmission.Transmitter
+  [Transceiver.Transceiver.Transceiver](/PierMesh/piermesh/src/branch/main/docs/Transceiver/Transceiver.md#Transceiver.Transceiver.Transceiver)
 
 #### network
 
@@ -51,6 +47,10 @@ Reference to our Catch Cache instance to pull from for serving Catchs
 * **Type:**
   [Daisy.Catch.Catch](/PierMesh/piermesh/src/branch/main/docs/Daisy/Catch.md#Daisy.Catch.Catch)
 
-#### *async* sendToPeer(peerID: str, data: str)
+#### *async* getPSKs()
+
+Get all PSKs for display
+
+#### *async* sendToPeer(peerID: str, data: str, target: str)
 
 Send data to Websocket of peer with peerID

docs/Sponge/Protocols/Yellow.md

@@ -0,0 +1,86 @@
+<a id="sponge-protocols-yellow"></a>
+
+# Sponge.Protocols.Yellow
+
+### *class* Sponge.Protocols.Yellow.YCTX(packetsID, packetCount, pAction, todo, cryptographyInfo, sourceNode, subMessage=False, subMessages={}, submessagesIDs=[], eData=None)
+
+Context data structure for message parsing
+
+### *class* Sponge.Protocols.Yellow.Yellow(yctx: [YCTX](#Sponge.Protocols.Yellow.YCTX))
+
+Message parser that’s subclassed to easily make parsers for specific protocols
+
+#### yctx
+
+Message parsing context
+
+* **Type:**
+  [YCTX](#Sponge.Protocols.Yellow.YCTX)
+
+#### message
+
+#### submessages
+
+Dictionary of submessages
+
+* **Type:**
+  dict
+
+#### submessagesIDs
+
+List of required submessages
+
+* **Type:**
+  list
+
+#### finishedSubmessages
+
+Dictionary of finished submessages
+
+* **Type:**
+  dict
+
+#### dataOrder
+
+List that maps packets based on their received order
+
+* **Type:**
+  list
+
+#### data
+
+Data of primary message
+
+* **Type:**
+  list
+
+#### nonce
+
+Cryptography artifact for decrypting message
+
+#### tag
+
+Cryptography artifact for decrypting message
+
+#### gotHead
+
+Whether we’ve gotten the head/header packet
+
+* **Type:**
+  bool
+
+#### todo
+
+Queue of actions to execute in the main loop
+
+#### checkComplete()
+
+#### *async* doAct(setpAction=False, repeatDataOnActions=[], subMessage=False)
+
+#### *async* dump()
+
+#### *async* id()
+
+#### pActions *= []*
+
+#### *async* processPacket(p, subMessage=False, rdoaoc=[])

docs/Sponge/Protocols/bubble.md

@@ -0,0 +1,11 @@
+<a id="sponge-protocols-bubble"></a>
+
+# Sponge.Protocols.bubble
+
+### *class* Sponge.Protocols.bubble.Bubble(yctx: [YCTX](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.YCTX))
+
+Peer to peer protol
+
+[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/src/Sponge/Protocols/bubble.py)
+
+#### pActions *= ['sendToPeer']*

docs/Sponge/Protocols/catch.md

@@ -0,0 +1,11 @@
+<a id="sponge-protocols-catch"></a>
+
+# Sponge.Protocols.catch
+
+### *class* Sponge.Protocols.catch.Catch(yctx: [YCTX](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.YCTX))
+
+Catch exchange protocol
+
+[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Sponge/Protocols/catch.py)
+
+#### pActions *= ['sendCatch', 'routeCatch', 'syncIndex']*

docs/Sponge/Protocols/cryptography.md

@@ -0,0 +1,11 @@
+<a id="sponge-protocols-cryptography"></a>
+
+# Sponge.Protocols.cryptography
+
+### *class* Sponge.Protocols.cryptography.CryptographyFilter(yctx: [YCTX](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.YCTX))
+
+Cryptographic operations protocol
+
+[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Sponge/Protocols/cryptography.py)
+
+#### pActions *= ['initCryptography']*

docs/Sponge/Protocols/hopper.md

@@ -0,0 +1,11 @@
+<a id="sponge-protocols-hopper"></a>
+
+# Sponge.Protocols.hopper
+
+### *class* Sponge.Protocols.hopper.Hopper(yctx: [YCTX](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.YCTX))
+
+Internet inter(h)op protocol
+
+[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Sponge/Protocols/hopper.py)
+
+#### pActions *= ['hop', 'routeHop']*

docs/Sponge/Protocols/map.md

@@ -0,0 +1,13 @@
+<a id="sponge-protocols-map"></a>
+
+# Sponge.Protocols.map
+
+### *class* Sponge.Protocols.map.Map(yctx: [YCTX](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.YCTX))
+
+Network mapping protocol
+
+[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Sponge/Protocols/map.py)
+
+#### pActions *= ['map', 'initCryptography']*
+
+#### process(message, isSubMessage=False)

docs/Sponge/base.md

@@ -2,43 +2,63 @@
 
 # base: Primary filtering functionality
 
-### *class* Sponge.base.Filter(cache, onodeID, todo, cLog)
+### *class* Sponge.base.Filter(cache, onodeID, todo, cryptographyInfo)
 
 Packet filtering orchestration
 
 [🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Sponge/base.py)
 
-cLog
-: Reference to run.Node.cLog for logging
-
-cache: Daisy.Cache.Cache
-: Reference to our Daisy Cache instance
-
-completed: list
-: List of completed messages IDs
-
-todo
-: Reference to list of actions to do in the Node
-
-onodeID
-: PierMesh node ID
-
 #### cache
 
-Messages is temporary storage for unfinished messages
+Reference to our Daisy Cache instance
+
+* **Type:**
+  [Daisy.Cache.Cache](/PierMesh/piermesh/src/branch/main/docs/Daisy/Cache.md#Daisy.Cache.Cache)
+
+#### onodeID
+
+PierMesh node ID
+
+#### todo
+
+Reference to list of actions to do in the Node
+
+#### cryptographyInfo
+
+Cryptography instance for encrypting message
+
+* **Type:**
+  [Cryptography.WhaleSong.Transport](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport)
+
+#### messages
+
+Temporary storage for unfinished messages
+
+* **Type:**
+  dict
+
+#### submessages
+
+Temporary storage for unfinished submessages
+
+* **Type:**
+  dict
+
+#### completed
+
+List of finished message ids so we don’t reprocess messages
+
+* **Type:**
+  list
 
 #### mCheck(payload: bytes)
 
 Check if payload bytes are msgpack encoded, otherwise skip
 
-#### *async* protoMap(protocolID: int)
+#### *async* protoMap(protocolID: int, packetsID, packetCount, sourceNode, submessagesIDs=[], pAction=None)
 
 Get protocol from protocol ID using the mlookup table
 
-#### *async* protoRoute(completeMessage: dict)
-
-Route message to proper protocol handler
-
 #### selfCheck(packet)
 
 Check if this is a self packet, if so skip
@@ -46,31 +66,3 @@ Check if this is a self packet, if so skip
 #### *async* sieve(packet)
 
 Base filtering logic, takes a single MeshTastic packet
-
-<a id="protocols"></a>
-
-# Protocols
-
-#### *async* bubble.filter(recipient, recipientNode, onodeID, todo)
-
-Peer to peer protol
-
-[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/src/Sponge/Protocols/bubble.py)
-
-#### *async* catch.filter(recipient, recipientNode, todo)
-
-Catch exchange protocol
-
-[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Sponge/Protocols/catch.py)
-
-#### *async* cryptography.filter(recipientNode, todo)
-
-Cryptographic operations protocol
-
-[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Sponge/Protocols/cryptography.py)
-
-#### *async* map.filter(todo)
-
-Network mapping protocol
-
-[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/Sponge/Protocols/map.py)

docs/Transceiver/Transceiver.md

@@ -2,7 +2,7 @@
 
 # Transceiver: Layer 0 data transceiving
 
-### *class* Transceiver.Transceiver.Transceiver(device, filter, onodeID, cache, catch, cryptographyInfo, cLog)
+### *class* Transceiver.Transceiver.Transceiver(device, filter, onodeID, cache, catch, cryptographyInfo, network)
 
 Handling LoRa transceiving
 
@@ -17,7 +17,7 @@ Reference to run.Node.cLog for logging
 Cryptography instance for encrypting transmissions
 
 * **Type:**
-  [Cryptography.WhaleSong.DHEFern](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern)
+  Cryptography.WhaleSong.DHEFern
 
 #### filter
 
@@ -114,6 +114,7 @@ Checks if acknowldgement was received per packet and if not resends
 #### responseCheck(packet)
 
 On acknowldgement response set acks based on response
+TODO: Stop this being sent to sieve
 
 #### send(packet, recipientNode=False)
 
@@ -122,6 +123,8 @@ Send individual packet
 * **Parameters:**
   **recipientNode** – If set send to specified node
 
-#### *async* sendAnnounce()
+#### *async* sendAnnounce(dontRespond=False)
 
 Send an announce packet (contains basic network mapping information) every so often so new nodes autoconnect
+
+#### *async* sendMessage(message: Message)

docs/readme.md

@@ -11,7 +11,6 @@ sphinx-quickstart on Fri Jul 26 23:30:55 2024. -->
 
 * [run: PierMesh service runner](/PierMesh/piermesh/src/branch/main/docs/run.md)
   * [`Node`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node)
-    * [`Node.toLog`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.toLog)
     * [`Node.actions`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.actions)
     * [`Node.todo`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.todo)
     * [`Node.network`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.network)
@@ -20,29 +19,28 @@ sphinx-quickstart on Fri Jul 26 23:30:55 2024. -->
     * [`Node.nodeInfo`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.nodeInfo)
     * [`Node.onodeID`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.onodeID)
     * [`Node.oTransceiver`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.oTransceiver)
-    * [`Node.processed`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.processed)
     * [`Node.proc`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.proc)
     * [`Node.mTasks`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.mTasks)
-    * [`Node.action_initNodeDH()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_initNodeDH)
-    * [`Node.action_keyDeriveDH()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_keyDeriveDH)
+    * [`Node.action_addPSK()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_addPSK)
+    * [`Node.action_hop()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_hop)
+    * [`Node.action_initCryptography()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_initCryptography)
     * [`Node.action_map()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_map)
+    * [`Node.action_routeCatch()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_routeCatch)
+    * [`Node.action_routeHop()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_routeHop)
     * [`Node.action_sendCatch()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_sendCatch)
     * [`Node.action_sendToPeer()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_sendToPeer)
-    * [`Node.cLog()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.cLog)
+    * [`Node.action_syncIndex()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.action_syncIndex)
+    * [`Node.fsInit()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.fsInit)
+    * [`Node.main()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.main)
+    * [`Node.monitor()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.monitor)
     * [`Node.spongeListen()`](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node.spongeListen)
-* [ui: TUI application](/PierMesh/piermesh/src/branch/main/docs/ui.md)
-  * [`TUI`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI)
-    * [`TUI.visibleLogo`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.visibleLogo)
-    * [`TUI.nodeOb`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.nodeOb)
-    * [`TUI.done`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.done)
-    * [`TUI.CSS_PATH`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.CSS_PATH)
-    * [`TUI.action_quitFull()`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.action_quitFull)
-    * [`TUI.action_toggleFullscreen()`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.action_toggleFullscreen)
-    * [`TUI.compose()`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.compose)
-    * [`TUI.do_set_cpu_percent()`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.do_set_cpu_percent)
-    * [`TUI.do_set_mem()`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.do_set_mem)
-    * [`TUI.do_write_line()`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.do_write_line)
-    * [`TUI.on_mount()`](/PierMesh/piermesh/src/branch/main/docs/ui.md#ui.TUI.on_mount)
+* [tlog](/PierMesh/piermesh/src/branch/main/docs/tlog.md)
+  * [`VHandler`](/PierMesh/piermesh/src/branch/main/docs/tlog.md#tlog.VHandler)
+    * [`VHandler.tolog`](/PierMesh/piermesh/src/branch/main/docs/tlog.md#tlog.VHandler.tolog)
+    * [`VHandler.emit()`](/PierMesh/piermesh/src/branch/main/docs/tlog.md#tlog.VHandler.emit)
+    * [`VHandler.tolog`](/PierMesh/piermesh/src/branch/main/docs/tlog.md#id0)
+  * [`logUI()`](/PierMesh/piermesh/src/branch/main/docs/tlog.md#tlog.logUI)
+  * [`runLogUI()`](/PierMesh/piermesh/src/branch/main/docs/tlog.md#tlog.runLogUI)
 * [Network: Network map representation](/PierMesh/piermesh/src/branch/main/docs/Siph/map.md)
   * [`Network`](/PierMesh/piermesh/src/branch/main/docs/Siph/map.md#Siph.map.Network)
     * [`Network.omap`](/PierMesh/piermesh/src/branch/main/docs/Siph/map.md#Siph.map.Network.omap)
@@ -60,7 +58,9 @@ sphinx-quickstart on Fri Jul 26 23:30:55 2024. -->
     * [`Network.getRoute()`](/PierMesh/piermesh/src/branch/main/docs/Siph/map.md#Siph.map.Network.getRoute)
     * [`Network.mimport()`](/PierMesh/piermesh/src/branch/main/docs/Siph/map.md#Siph.map.Network.mimport)
     * [`Network.render()`](/PierMesh/piermesh/src/branch/main/docs/Siph/map.md#Siph.map.Network.render)
+    * [`Network.syncaddLookup()`](/PierMesh/piermesh/src/branch/main/docs/Siph/map.md#Siph.map.Network.syncaddLookup)
 * [hopper: Small internet interop utilities](/PierMesh/piermesh/src/branch/main/docs/Components/hopper.md)
+  * [`downloadFile()`](/PierMesh/piermesh/src/branch/main/docs/Components/hopper.md#Components.hopper.downloadFile)
   * [`get()`](/PierMesh/piermesh/src/branch/main/docs/Components/hopper.md#Components.hopper.get)
   * [`post()`](/PierMesh/piermesh/src/branch/main/docs/Components/hopper.md#Components.hopper.post)
 * [Daisy based cache](/PierMesh/piermesh/src/branch/main/docs/Daisy/Cache.md)
@@ -73,55 +73,102 @@ sphinx-quickstart on Fri Jul 26 23:30:55 2024. -->
   * [`Catch`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Catch.md#Daisy.Catch.Catch)
     * [`Catch.get()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Catch.md#Daisy.Catch.Catch.get)
     * [`Catch.sget()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Catch.md#Daisy.Catch.Catch.sget)
+* [Credential](/PierMesh/piermesh/src/branch/main/docs/Daisy/Credential.md)
+  * [`Credential`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Credential.md#Daisy.Credential.Credential)
+* [CryptographyUtil](/PierMesh/piermesh/src/branch/main/docs/Daisy/CryptographyUtil.md)
+  * [`SteelPetal`](/PierMesh/piermesh/src/branch/main/docs/Daisy/CryptographyUtil.md#Daisy.CryptographyUtil.SteelPetal)
+    * [`SteelPetal.decrypt()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/CryptographyUtil.md#Daisy.CryptographyUtil.SteelPetal.decrypt)
+    * [`SteelPetal.encrypt()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/CryptographyUtil.md#Daisy.CryptographyUtil.SteelPetal.encrypt)
+    * [`SteelPetal.pad()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/CryptographyUtil.md#Daisy.CryptographyUtil.SteelPetal.pad)
 * [Daisy](/PierMesh/piermesh/src/branch/main/docs/Daisy/Daisy.md)
   * [`Daisy`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Daisy.md#Daisy.Daisy.Daisy)
     * [`Daisy.filepath`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Daisy.md#Daisy.Daisy.Daisy.filepath)
     * [`Daisy.msg`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Daisy.md#Daisy.Daisy.Daisy.msg)
     * [`Daisy.get()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Daisy.md#Daisy.Daisy.Daisy.get)
+    * [`Daisy.json_to_msg()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Daisy.md#Daisy.Daisy.Daisy.json_to_msg)
     * [`Daisy.read()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Daisy.md#Daisy.Daisy.Daisy.read)
     * [`Daisy.sublist()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Daisy.md#Daisy.Daisy.Daisy.sublist)
     * [`Daisy.write()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Daisy.md#Daisy.Daisy.Daisy.write)
-* [Soil: Daisy signal management](/PierMesh/piermesh/src/branch/main/docs/Daisy/Soil.md)
-  * [`Compound`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Soil.md#Daisy.Soil.Compound)
-    * [`Compound.on_any_event()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Soil.md#Daisy.Soil.Compound.on_any_event)
+* [Index](/PierMesh/piermesh/src/branch/main/docs/Daisy/Index.md)
+  * [`Index`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Index.md#Daisy.Index.Index)
+    * [`Index.addEntry()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Index.md#Daisy.Index.Index.addEntry)
+    * [`Index.search()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Index.md#Daisy.Index.Index.search)
+* [Ref](/PierMesh/piermesh/src/branch/main/docs/Daisy/Ref.md)
+  * [`Ref`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Ref.md#Daisy.Ref.Ref)
 * [Store: Daisy key value store](/PierMesh/piermesh/src/branch/main/docs/Daisy/Store.md)
   * [`Store`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Store.md#Daisy.Store.Store)
+    * [`Store.epehemeral`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Store.md#Daisy.Store.Store.epehemeral)
+    * [`Store.createEmpty()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Store.md#Daisy.Store.Store.createEmpty)
     * [`Store.getRecord()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Store.md#Daisy.Store.Store.getRecord)
     * [`Store.update()`](/PierMesh/piermesh/src/branch/main/docs/Daisy/Store.md#Daisy.Store.Store.update)
-* [WhaleSong: Diffie hellman ephemeral Fernet based encryption](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md)
-  * [`DHEFern`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern)
-    * [`DHEFern.cLog`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.cLog)
-    * [`DHEFern.loadedParams`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.loadedParams)
-    * [`DHEFern.loadedKeys`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.loadedKeys)
-    * [`DHEFern.nodeNickname`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.nodeNickname)
-    * [`DHEFern.cache`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.cache)
-    * [`DHEFern.publicKey`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.publicKey)
-    * [`DHEFern.privateKey`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.privateKey)
-    * [`DHEFern.checkInMem()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.checkInMem)
-    * [`DHEFern.decrypt()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.decrypt)
-    * [`DHEFern.encrypt()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.encrypt)
-    * [`DHEFern.genKeyPair()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.genKeyPair)
-    * [`DHEFern.genParams()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.genParams)
-    * [`DHEFern.getParamsBytes()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.getParamsBytes)
-    * [`DHEFern.getRecord()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.getRecord)
-    * [`DHEFern.getSalt()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.getSalt)
-    * [`DHEFern.initStore()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.initStore)
-    * [`DHEFern.keyDerive()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.keyDerive)
-    * [`DHEFern.loadParamBytes()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.loadParamBytes)
-    * [`DHEFern.loadRecordToMem()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.DHEFern.loadRecordToMem)
+* [WhaleSong](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md)
+  * [`Transport`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport)
+    * [`Transport.loadedKeys`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.loadedKeys)
+    * [`Transport.nodeNickname`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.nodeNickname)
+    * [`Transport.cache`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.cache)
+    * [`Transport.publicKey`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.publicKey)
+    * [`Transport.privateKey`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.privateKey)
+    * [`Transport.daisyCryptography`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.daisyCryptography)
+    * [`Transport.addPeerEphemeralKey()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.addPeerEphemeralKey)
+    * [`Transport.addPublickey()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.addPublickey)
+    * [`Transport.decrypt()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.decrypt)
+    * [`Transport.encrypt()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.encrypt)
+    * [`Transport.genOurEphemeralKey()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.genOurEphemeralKey)
+    * [`Transport.genStaticKey()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.genStaticKey)
+    * [`Transport.generateSessionKey()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.generateSessionKey)
+    * [`Transport.getRecord()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.getRecord)
+    * [`Transport.initStore()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.initStore)
+    * [`Transport.kdf()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.kdf)
+    * [`Transport.sessionSetup()`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport.sessionSetup)
 * [base: Primary filtering functionality](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md)
   * [`Filter`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter)
     * [`Filter.cache`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.cache)
+    * [`Filter.onodeID`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.onodeID)
+    * [`Filter.todo`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.todo)
+    * [`Filter.cryptographyInfo`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.cryptographyInfo)
+    * [`Filter.messages`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.messages)
+    * [`Filter.submessages`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.submessages)
+    * [`Filter.completed`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.completed)
     * [`Filter.mCheck()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.mCheck)
     * [`Filter.protoMap()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.protoMap)
-    * [`Filter.protoRoute()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.protoRoute)
     * [`Filter.selfCheck()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.selfCheck)
     * [`Filter.sieve()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.base.Filter.sieve)
-* [Protocols](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#protocols)
-  * [`bubble.filter()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.Protocols.bubble.filter)
-  * [`catch.filter()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.Protocols.catch.filter)
-  * [`cryptography.filter()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.Protocols.cryptography.filter)
-  * [`map.filter()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/base.md#Sponge.Protocols.map.filter)
+* [Sponge.Protocols.Yellow](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md)
+  * [`YCTX`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.YCTX)
+  * [`Yellow`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow)
+    * [`Yellow.yctx`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.yctx)
+    * [`Yellow.message`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.message)
+    * [`Yellow.submessages`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.submessages)
+    * [`Yellow.submessagesIDs`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.submessagesIDs)
+    * [`Yellow.finishedSubmessages`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.finishedSubmessages)
+    * [`Yellow.dataOrder`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.dataOrder)
+    * [`Yellow.data`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.data)
+    * [`Yellow.nonce`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.nonce)
+    * [`Yellow.tag`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.tag)
+    * [`Yellow.gotHead`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.gotHead)
+    * [`Yellow.todo`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.todo)
+    * [`Yellow.checkComplete()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.checkComplete)
+    * [`Yellow.doAct()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.doAct)
+    * [`Yellow.dump()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.dump)
+    * [`Yellow.id()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.id)
+    * [`Yellow.pActions`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.pActions)
+    * [`Yellow.processPacket()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/Yellow.md#Sponge.Protocols.Yellow.Yellow.processPacket)
+* [Sponge.Protocols.bubble](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/bubble.md)
+  * [`Bubble`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/bubble.md#Sponge.Protocols.bubble.Bubble)
+    * [`Bubble.pActions`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/bubble.md#Sponge.Protocols.bubble.Bubble.pActions)
+* [Sponge.Protocols.catch](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/catch.md)
+  * [`Catch`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/catch.md#Sponge.Protocols.catch.Catch)
+    * [`Catch.pActions`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/catch.md#Sponge.Protocols.catch.Catch.pActions)
+* [Sponge.Protocols.cryptography](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/cryptography.md)
+  * [`CryptographyFilter`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/cryptography.md#Sponge.Protocols.cryptography.CryptographyFilter)
+    * [`CryptographyFilter.pActions`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/cryptography.md#Sponge.Protocols.cryptography.CryptographyFilter.pActions)
+* [Sponge.Protocols.hopper](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/hopper.md)
+  * [`Hopper`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/hopper.md#Sponge.Protocols.hopper.Hopper)
+    * [`Hopper.pActions`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/hopper.md#Sponge.Protocols.hopper.Hopper.pActions)
+* [Sponge.Protocols.map](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/map.md)
+  * [`Map`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/map.md#Sponge.Protocols.map.Map)
+    * [`Map.pActions`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/map.md#Sponge.Protocols.map.Map.pActions)
+    * [`Map.process()`](/PierMesh/piermesh/src/branch/main/docs/Sponge/Protocols/map.md#Sponge.Protocols.map.Map.process)
 * [Header packet: Metadata packet](/PierMesh/piermesh/src/branch/main/docs/Packets/HeaderPacket.md)
   * [`Header`](/PierMesh/piermesh/src/branch/main/docs/Packets/HeaderPacket.md#Packets.HeaderPacket.Header)
     * [`Header.sender`](/PierMesh/piermesh/src/branch/main/docs/Packets/HeaderPacket.md#Packets.HeaderPacket.Header.sender)
@@ -147,7 +194,23 @@ sphinx-quickstart on Fri Jul 26 23:30:55 2024. -->
 * [SubMessage: Additional data for larger messages](/PierMesh/piermesh/src/branch/main/docs/Packets/SubMessage.md)
   * [`SubMessage`](/PierMesh/piermesh/src/branch/main/docs/Packets/SubMessage.md#Packets.SubMessage.SubMessage)
 * [SubPacket: Packets for submessages](/PierMesh/piermesh/src/branch/main/docs/Packets/SubPacket.md)
-  * [`SubPacket`](/PierMesh/piermesh/src/branch/main/docs/Packets/SubPacket.md#Packets.SubPacket.SubPacket)
+  * [`SubMessage`](/PierMesh/piermesh/src/branch/main/docs/Packets/SubPacket.md#Packets.SubMessage.SubMessage)
+* [bubble.Bubble](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/bubble/Bubble.md)
+  * [`Bubble`](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/bubble/Bubble.md#Packets.Messages.Protocols.bubble.Bubble.Bubble)
+* [catch.IndexSync](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/catch/IndexSync.md)
+  * [`IndexSync`](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/catch/IndexSync.md#Packets.Messages.Protocols.catch.IndexSync.IndexSync)
+* [catch.Request](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/catch/Request.md)
+  * [`CatchRequest`](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/catch/Request.md#Packets.Messages.Protocols.catch.Request.CatchRequest)
+* [catch.Response](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/catch/Response.md)
+  * [`CatchResponse`](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/catch/Response.md#Packets.Messages.Protocols.catch.Response.CatchResponse)
+* [cryptography.Handshake](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/cryptography/Handshake.md)
+  * [`Handshake`](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/cryptography/Handshake.md#Packets.Messages.Protocols.cryptography.Handshake.Handshake)
+* [hopper.Request](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/hopper/Request.md)
+  * [`HopperRequest`](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/hopper/Request.md#Packets.Messages.Protocols.hopper.Request.HopperRequest)
+* [hopper.Response](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/hopper/Response.md)
+  * [`HopperResponse`](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/hopper/Response.md#Packets.Messages.Protocols.hopper.Response.HopperResponse)
+* [map.Announce](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/map/Announce.md)
+  * [`AnnounceMessage`](/PierMesh/piermesh/src/branch/main/docs/Packets/Messages/Protocols/map/Announce.md#Packets.Messages.Protocols.map.Announce.AnnounceMessage)
 * [Transceiver: Layer 0 data transceiving](/PierMesh/piermesh/src/branch/main/docs/Transceiver/Transceiver.md)
   * [`Transceiver`](/PierMesh/piermesh/src/branch/main/docs/Transceiver/Transceiver.md#Transceiver.Transceiver.Transceiver)
     * [`Transceiver.cLog`](/PierMesh/piermesh/src/branch/main/docs/Transceiver/Transceiver.md#Transceiver.Transceiver.Transceiver.cLog)
@@ -170,17 +233,32 @@ sphinx-quickstart on Fri Jul 26 23:30:55 2024. -->
     * [`Transceiver.responseCheck()`](/PierMesh/piermesh/src/branch/main/docs/Transceiver/Transceiver.md#Transceiver.Transceiver.Transceiver.responseCheck)
     * [`Transceiver.send()`](/PierMesh/piermesh/src/branch/main/docs/Transceiver/Transceiver.md#Transceiver.Transceiver.Transceiver.send)
     * [`Transceiver.sendAnnounce()`](/PierMesh/piermesh/src/branch/main/docs/Transceiver/Transceiver.md#Transceiver.Transceiver.Transceiver.sendAnnounce)
+    * [`Transceiver.sendMessage()`](/PierMesh/piermesh/src/branch/main/docs/Transceiver/Transceiver.md#Transceiver.Transceiver.Transceiver.sendMessage)
 * [serve: Web UI server](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md)
   * [`Server`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server)
-    * [`Server.cLog`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.cLog)
-    * [`Server.transmitter`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.transmitter)
+    * [`Server.transceiver`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.transceiver)
     * [`Server.network`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.network)
     * [`Server.nodeID`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.nodeID)
     * [`Server.peerIDs`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.peerIDs)
     * [`Server.app`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.app)
     * [`Server.catch`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.catch)
+    * [`Server.getPSKs()`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.getPSKs)
     * [`Server.sendToPeer()`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.sendToPeer)
-
+* [Context](/PierMesh/piermesh/src/branch/main/docs/Config/Context.md)
+  * [`Context`](/PierMesh/piermesh/src/branch/main/docs/Config/Context.md#Config.Context.Context)
+    * [`Context.ctx`](/PierMesh/piermesh/src/branch/main/docs/Config/Context.md#Config.Context.Context.ctx)
+* [Services.Action](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md)
+  * [`Action`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action)
+    * [`Action.action`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action.action)
+    * [`Action.data`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action.data)
+    * [`Action.sender`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action.sender)
+    * [`Action.senderID`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action.senderID)
+    * [`Action.sourceNode`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action.sourceNode)
+    * [`Action.recipient`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action.recipient)
+    * [`Action.recipientNode`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action.recipientNode)
+    * [`Action.getAction()`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action.getAction)
+    * [`Action.getData()`](/PierMesh/piermesh/src/branch/main/docs/Services/Action.md#Services.Action.Action.getData)
+$
 
 # System Overview
 

docs/run.md

@@ -8,13 +8,6 @@ Class that handles most of the PierMesh data
 
 [🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/src/run.py)
 
-#### toLog
-
-We store logs to be processed here
-
-* **Type:**
-  list
-
 #### actions
 
 Dictionary mapping methods with the action prefix to the method name after action dynamically to be called through Sponge (Sponge.base) filtering
@@ -71,13 +64,6 @@ LoRa transceiver Transceiver
 * **Type:**
   [Transceiver](/PierMesh/piermesh/src/branch/main/docs/Transceiver/Transceiver.md#Transceiver.Transceiver.Transceiver)
 
-#### processed
-
-List of IDs of already completed messages so that we don’t reprocess messages
-
-* **Type:**
-  list
-
 #### proc
 
 This process (psutil.Process), used for managing and monitoring PierMesh
@@ -92,29 +78,37 @@ Dictionary of PierMesh service tasks
 * **Type:**
   dict
 
-#### SEE ALSO
-`logPassLoop`
-: Loop to handle logging to file and TUI
+#### *async* action_addPSK(data)
 
-#### *async* action_initNodeDH(data: dict)
+Action to add PSK for specific node, currently unused
 
-Initialize diffie hellman key exchange
+#### *async* action_hop(data)
+
+Proxy a request to the main internet (in the future cross protocol/link)
+
+#### *async* action_initCryptography(data: dict)
+
+Initialize AES-GCM encrypted transport session
 
 #### SEE ALSO
-`Cryptography.DHEFern.DHEFern`
+[`Cryptography.WhaleSong.Transport`](/PierMesh/piermesh/src/branch/main/docs/Cryptography/WhaleSong.md#Cryptography.WhaleSong.Transport)
 : End to end encryption functionality
 
-#### *async* action_keyDeriveDH(data: dict)
-
-Derive key via diffie hellman key exchange
-
 #### *async* action_map(data: dict)
 
 Map new network data to internal network map
 
 #### SEE ALSO
 `Siph.network.Network`
-: Layered graph etwork representation
+: Layered graph network representation
+
+#### *async* action_routeCatch(data: dict)
+
+Route received catch to peer who requested it
+
+#### *async* action_routeHop(data: dict)
+
+Return proxy request results to requester
 
 #### *async* action_sendCatch(data: dict)
 
@@ -131,21 +125,27 @@ Send data to a peer connected to the server
 `Sponge.Protocols`
 : Protocol based packet filtering
 
-`webui.serve.Server`
+[`Splash.serve.Server`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server)
 : Runs a light Microdot web server with http/s and websocket functionality
 
-`webui.serve.Server.sendToPeer`
+[`Splash.serve.Server.sendToPeer`](/PierMesh/piermesh/src/branch/main/docs/Splash/serve.md#Splash.serve.Server.sendToPeer)
 : Function to actually execute the action
 
-#### cLog(priority: int, message: str)
+#### *async* action_syncIndex(data: dict)
 
-Convenience function that logs to the ui and log files
+Add received index entries to Catch via the a remote Catch index
 
-* **Parameters:**
-  * **priority** (*int*) – Priority of message to be passed to logging
-  * **message** (*str*) – Message to log
-* **Return type:**
-  None
+#### *async* fsInit()
+
+Initialize the file system for use
+
+#### *async* main()
+
+Main loop, sets up the message listening, system monitoring and server running loops
+
+#### *async* monitor()
+
+Monitor and log ram and cpu usage
 
 #### *async* spongeListen()
 

docs/stale/Soil.md

@@ -0,0 +1,3 @@
+<a id="soil-daisy-signal-management"></a>
+
+# Soil: Daisy signal management

docs/stale/ui.md

@@ -0,0 +1,3 @@
+<a id="ui-tui-application"></a>
+
+# ui: TUI application

docs/tlog.md

@@ -0,0 +1,35 @@
+<a id="module-tlog"></a>
+
+<a id="tlog"></a>
+
+# tlog
+
+### *class* tlog.VHandler(level, tolog)
+
+Custom log handler to push logs into a thread-safe queue so the TUI can read them
+
+[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/src/tlog.py)
+
+#### tolog
+
+Thread-safe log queue
+
+* **Type:**
+  Queue.queue
+
+#### emit(record)
+
+Do whatever it takes to actually log the specified logging record.
+
+This version is intended to be implemented by subclasses and so
+raises a NotImplementedError.
+
+#### tolog *= <queue.Queue object>*
+
+### tlog.logUI(stdscr, tolog, nodeNickname)
+
+TUI loop
+
+### tlog.runLogUI(tolog, nodeNickname)
+
+Some required kludge

docs/ui.md

@@ -1,74 +0,0 @@
-<a id="ui-tui-application"></a>
-
-# ui: TUI application
-
-### *class* ui.TUI(driver_class: Type[Driver] | None = None, css_path: str | PurePath | List[str | PurePath] | None = None, watch_css: bool = False)
-
-TUI for PierMesh
-
-[🔗 Source](https://git.utopic.work/PierMesh/piermesh/src/branch/main/src/ui.py)
-
-#### visibleLogo
-
-Whether the logo is visible or not, used in toggling visibility
-
-* **Type:**
-  bool
-
-#### nodeOb
-
-Reference to the Node running the PierMesh service
-
-* **Type:**
-  [Node](/PierMesh/piermesh/src/branch/main/docs/run.md#run.Node)
-
-#### done
-
-Whether the TUI has been killed
-
-* **Type:**
-  bool
-
-#### CSS_PATH *: ClassVar[CSSPathType | None]* *= 'ui.tcss'*
-
-File paths to load CSS from.
-
-#### action_quitFull()
-
-Kill the whole stack by setting self to done and terminating the thread. We check in run.monitor later and kill the rest of the stack then with psutil
-
-#### SEE ALSO
-`run.monitor`
-
-#### action_toggleFullscreen()
-
-Toggle fullscreen logs by either collapsing width or setting it to it’s original size
-
-#### compose()
-
-Build the TUI
-
-#### do_set_cpu_percent(percent: float)
-
-Set CPU percent in the label and progress bar
-
-* **Parameters:**
-  **percent** (*float*) – Percent of the cpu PierMesh is using
-
-#### do_set_mem(memmb: float)
-
-Set memory usage label in the ui
-
-* **Parameters:**
-  **memmb** (*float*) – Memory usage of PierMesh in megabytes
-
-#### do_write_line(logLine: str)
-
-Write line to the logs panel
-
-* **Parameters:**
-  **logLine** (*str*) – Line to log
-
-#### on_mount()
-
-Called at set up, configures the title and the progess bar

src/.piermesh

@@ -1,9 +1,9 @@
 # DONT TOUCH THIS SECTION UNLESS YOU KNOW WHAT YOURE DOING
 [DEFAULT]
-Nickname = node00
+Nickname = node1
 StartupDelay = 0
 WebUIPort = 5000
-ShowTUI = True
+ShowTUI = False
 
 [OPERATOR_REQUIRED]
 TransceiverPort = /dev/ttyACM0
@@ -12,3 +12,4 @@ PSK = jgf765!FS0+6
 # DO YOUR NON REQUIRED SETTINGS HERE
 [OPERATOR_OVERRIDES]
 
+ShowTUI = False

src/Components/hopper.py

@@ -1,19 +1,21 @@
-from bs4 import BeautifulSoup
-
+# NOTE: Used for requesting web pages
 import requests
 
-import msgpack
+# NOTE: Used for parsing web pages
+from bs4 import BeautifulSoup
 
-import lzma
+# NOTE: Generic imports
 import base64
 import mimetypes
 import logging
 
-from Packets.Messages.Protocols.hopper.Response import HopperResponse
-
 logger = logging.getLogger("__main__." + __name__)
 
+
 def downloadFile(url, text=True, mimeType=None):
+    """
+    Download resource from url and convert it to text or a data url
+    """
     fbytes = b""
     with requests.get(url, stream=True) as r:
         r.raise_for_status()
@@ -25,7 +27,7 @@ def downloadFile(url, text=True, mimeType=None):
         if mimeType == None:
             mimeType, encoding = mimetypes.guess_type(url)
             if mimeType == None:
-                raise Error(
+                raise ValueError(
                     "Couldnt guess mime type and none was supplied, cant encode to data url"
                 )
         b64str = base64.b64encode(fbytes).decode("utf-8")

src/Config/Context.py

@@ -1,8 +1,25 @@
 
-
 class Context:
+    """
+    Generic context data structure, current subclassed for use in filters, see Sponge/Protocols/Yellow.py
+
+    `🔗 Source <https://git.utopic.work/PierMesh/piermesh/src/branch/main/Config/Context.py>`__
+    
+    Attributes
+    ----------
+    ctx: dict
+        Dictionary of context values
+    
+    """
     def __init__(self, subsets: dict={}, **kwargs):
-        # Subsets should be a dict of list of value keys
+        """
+        Parameters
+        ----------
+        subsets: dict
+            Keys mapped to lists of keys for grouping values (unused currently)
+        kwargs: kwargs
+            key word arguments to map to the context as key/val pairs
+        """
         self.ctx = {}
         self.subsets = subsets
         for key, val in kwargs.items():

src/Config/Context.rst

@@ -0,0 +1,5 @@
+Context
+=======
+
+.. autoclass:: Config.Context.Context
+    :members:

src/Cryptography/WhaleSong.py

@@ -1,24 +1,25 @@
-import base64
+# NOTE: Generic imports
 import os
 import lzma
 import logging
+import traceback
 
+# NOTE: Import for handling message data
 import msgpack
 
+# NOTE: Cryptography imports
 from Crypto.PublicKey import ECC
 from Crypto.Hash import SHAKE128
 from Crypto.Protocol.DH import key_agreement
 from Crypto.Cipher import AES
 
+# NOTE: Daisy database import
 from Daisy.Store import Store
 
 
 logger = logging.getLogger("__main__." + __name__)
 
 # TODO: Different store directories per node
-# TODO: First time psk transport initiation
-# Add this credential manually, its picked up and used when the two nodes try to communicate before the session is encrypted
-
 
 class Transport:
     """
@@ -27,11 +28,6 @@ class Transport:
 
     Attributes
     ----------
-    cLog
-        Method reference to `run.Node.cLog` so we can log to the ui from here
-
-    loadedParams: dict
-        In memory representations of cryptography parameters
 
     loadedKeys: dict
         In memory representations of cryptography keys
@@ -39,7 +35,7 @@ class Transport:
     nodeNickname: str
         Name of node for isolating configs when running multiple nodes
 
-    cache: Components.daisy.Cache
+    cache: Daisy.Cache.Cache
         Daisy cache for use in storing cryptography information
 
     publicKey
@@ -47,39 +43,43 @@ class Transport:
 
     privateKey
         Private key for node
-    """
 
+    daisyCryptography: Daisy.CryptographyUtil.SteelPetal
+        Record cryptography reference
+    """
     def __init__(self, cache, nodeNickname, daisyCryptography, psk):
         """
         Parameters
         ----------
-        cache: Components.daisy.Cache
+        cache: Daisy.Cache.Cache
             Reference to the node instances Daisy cache
 
         nodeNickname: str
             Node nickname for record storage
 
-        cLog
-            Reference to `run.Node.cLog`
+        daisyCryptography: Daisy.CryptographyUtil.SteelPetal
+            Record cryptography reference
 
+        psk: str
+            Plaintext pre shared key
         """
         self.stores = {}
         self.nodeNickname = nodeNickname
         self.cache = cache
         self.daisyCryptography = daisyCryptography
-        if os.path.exists("daisy/cryptography/{0}/key".format(nodeNickname)) == False:
-            logger.log(20, "Key store DNE, initializing")
+        if not os.path.exists("{0}/daisy/cryptography/key".format(nodeNickname)):
+            logger.info("Key store DNE, initializing")
             self.initStore("key")
         else:
-            logger.log(20, "Key store exists, loading")
+            logger.info("Key store exists, loading")
         self.stores["key"] = Store(
             "key", "cryptography", nodeNickname, daisyCryptography
         )
-            logger.log(20, "Store loaded")
-        logger.log(20, "Key store initialized")
+        logger.info("Key store initialized")
         srecord = self.getRecord("key", "self")
         if srecord == False:
             self.stores["key"].createEmpty("self")
+        # TODO: Note that this happens in the docs
         self.stores["key"].update(
             "self",
             {"PSK": self.daisyCryptography.pad(psk).encode("utf-8")},
@@ -95,56 +95,12 @@ class Transport:
                                      }, write=False)
 
     def kdf(self, bytesX):
+        """
+        Key derivation function
+        """
+        # TODO: Better explanation
         return SHAKE128.new(bytesX).read(32)
 
-    def checkInMem(self, store: str, nodeID: str, checkFieldsExist=[]):
-        """
-        Check if parameters or keys are loaded for node of nodeID
-
-        Parameters
-        ----------
-        store: str
-            Whether to check loaded keys or parameters
-
-        """
-        if store == "param":
-            return nodeID in self.loadedParams.keys()
-        elif store == "key":
-            record = self.getRecord("key", nodeID)
-            if record != False:
-                for field in checkFieldsExist:
-                    if not (field in record.keys()):
-                        if field == "staticKey":
-                            self.genStaticKey(nodeID)
-                        elif field == "ourEphemeralKey":
-                            self.genOurEphemeralKey(nodeID)
-
-    def loadRecordToMem(self, store: str, nodeID: str):
-        """
-        Load record of nodeID from store to either keys or pameters
-        """
-        r = self.getRecord(store, nodeID)
-        if r == False:
-            logger.log(
-                30, "Tried to load nonexistent {0} for node {1}".format(store, nodeID)
-            )
-            return False
-        elif self.checkInMem(store, nodeID):
-            logger.log(10, "{0}s already deserialized, skipping".format(store))
-        else:
-            if store == "param":
-                self.loadedParams[nodeID] = self.loadParamBytes(r)
-            """
-            elif store == "key":
-                self.loadedKeys[nodeID] = {
-                    "publicKey": Serialization.load_pem_public_key(r["publicKey"]),
-                    "privateKey": Serialization.load_pem_private_key(
-                        r["privateKey"], None
-                    ),
-                }
-            """
-            return True
-
     def getRecord(self, store: str, key: str, ephemeral=False):
         """
         Get record from store: store with key: key
@@ -156,7 +112,6 @@ class Transport:
         else:
             return r
 
-    # TODO: Fix stores, URGENT
     def initStore(self, store: str):
         """
         Initialize store: store
@@ -164,23 +119,14 @@ class Transport:
         self.stores[store] = Store(
             store, "cryptography", self.nodeNickname, self.daisyCryptography
         )
-        if store == "param":
-            self.genParams()
-            self.stores[store].update("self", self.getParamsBytes(), recur=False)
-        elif store == "key":
+        if store == "key":
             self.stores[store].update("self", {}, recur=False)
         else:
-            logger.log(30, "Store not defined")
+            logger.warning("Store not defined")
 
-    def genStaticKey(self, onodeID, paramsOverride=False):
+    def genStaticKey(self, onodeID):
         """
-        Generate public and private keys from self.params (TODO: Gen from passed params)
-
-        paramsOverride
-            False or parameters to use (TODO)
-
-        setSelf: bool
-            Whether to set self.privateKey and self.publicKey
+        Generate static key for session encryption with given node
         """
         staticKey = ECC.generate(curve="p256")
         self.stores["key"].update(
@@ -194,10 +140,25 @@ class Transport:
         self.stores["key"].update(onodeID, {"staticKey": staticKey}, write=False)
 
     def genOurEphemeralKey(self, onodeID):
+        """
+        Generate epehemeral key for session encryption with given node
+        """
         ourEphemeralKey = ECC.generate(curve="p256")
         self.stores["key"].update(onodeID, {"ourEphemeralKey": ourEphemeralKey}, write=False)
 
-    def addPublickey(self, onodeID, publicKey, forSelf=False):
+    def addPublickey(self, onodeID, publicKey, forSelf: bool = False):
+        """
+        Add a public key for a given node including this one
+
+        onodeID
+            Node identifier
+
+        publicKey
+            Public key to add
+
+        forSelf: bool
+            Whether to add key for this node
+        """
         if forSelf:
             publicKey = ECC.generate(curve="p256")
             self.stores["key"].update("self", {
@@ -210,30 +171,48 @@ class Transport:
                                       },
                                       write=False)
         else:
-            # TODO: Fix stores
-            # self.stores["key"].update(onodeID, {"publicKey": publicKey})
-            logger.log(20, "Importing keys")
+            logger.info("Importing keys")
             record = self.getRecord("key", onodeID)
             if record == False:
                 self.stores["key"].createEmpty(onodeID)
             self.stores["key"].update(onodeID, {"publicKey": publicKey})
             self.stores["key"].update(onodeID, {"publicKey": ECC.import_key(publicKey)}, write=False)
 
-    def addPeerEphemeralKey(self, onodeID, peerEphemeralKey):
+    def addPeerEphemeralKey(self, onodeID, peerEphemeralKey: bytes):
+        """
+        Add a peer node's epehemeral key for session encryption
+
+        onodeID
+            Node identifier
+
+        peerEphemeralKey: bytes
+            Serialized ephemeral key
+        """
         self.stores["key"].update(onodeID, {"peerEphemeralKey": ECC.import_key(peerEphemeralKey)}, write=False)
 
-    def sessionSetup(self, onodeID, peerEphemeralKey):
-        # TODO: Deeper checking before loading
-        # TODO: Loading existing records
-        if self.getRecord("key", onodeID) == False:
-            logger.log(30, "No record, waiting for announce")
+    def sessionSetup(self, onodeID, peerEphemeralKey: bytes):
+        """
+        Set up transport encryption session
+
+        onodeID
+            Node identifier
+
+        peerEphemeralKey: bytes
+            Serialized ephemeral key
+        """
+        if not self.getRecord("key", onodeID):
+            logger.warning("No record, waiting for announce")
         else:
             self.addPeerEphemeralKey(onodeID, peerEphemeralKey)
             self.generateSessionKey(onodeID)
 
     def generateSessionKey(self, onodeID):
-        # TODO: Gen static key if not exists
-        # TODO: Gen our ephemeral key if not exists
+        """
+        Generate session key for transport encryption
+
+        onodeID
+            Node identifier
+        """
         keysOb = self.getRecord("key", onodeID, ephemeral=True)
         if ("publicKey" not in keysOb) or ("staticKey" not in keysOb):
             dkeysOb = self.getRecord("key", onodeID)
@@ -273,16 +252,18 @@ class Transport:
         self.stores["key"].update(onodeID, {"sessionKey": sessionKey}, write=False)
         return sessionKey
 
-    # TODO: Build in transport security (node/node)
     def encrypt(self, data, nodeID: str, isDict: bool = True, pskEncrypt=False):
         """
-        Do Fernet encryption
+        Encrypt given data with AES GCM
 
         data
             Either bytes or dict to encrypt
 
         isDict: bool
             Whether data is a dictionary
+
+        pskEncrypt: bool
+            Whether to encrypt with pre-shared key
         """
         if nodeID == "-00001" or pskEncrypt:
             cipher = AES.new(self.getRecord("key", "self", ephemeral=True)["PSK"], AES.MODE_GCM)
@@ -317,24 +298,33 @@ class Transport:
             else:
                 logger.log(20, "Node {0} does not have session key".format(nodeID))
 
-    def decrypt(self, data, nodeID: str, nonce, tag):
+    def decrypt(self, data, onodeID: str, nonce, tag):
         """
-        Decrypt bytes and return either str or dict (TODO: Check whether to msgpack load)
+        Decrypt bytes and return either str or dict depending on result
+
+        onodeID: str
+            Node identifier
+
+        nonce
+            Encryption nonce
+
+        tag
+            Encryption tag
         """
-        # TODO: Handling existing record
-        record = self.getRecord("key", nodeID, ephemeral=True)
+        record = self.getRecord("key", onodeID, ephemeral=True)
         if (record == False) or ("sessionKey" not in record.keys()):
             cipher = AES.new(self.getRecord("key", "self", ephemeral=True)["PSK"], AES.MODE_GCM, nonce=nonce)
 
             data = cipher.decrypt(data)
-            logger.log(10, data)
-            #data = msgpack.loads(data)
+            # logger.debug(data)
+            try:
                 data = msgpack.loads(lzma.decompress(data))
-            logger.log(10, "Decrypt/deserialize output")
-            logger.log(10, data)
+            except Exception:
+                logger.error(traceback.format_exc())
+                return False
+            # logger.debug("Decrypt/deserialize output")
+            # logger.debug(data)
             return data
-            # logger.log(20, "Node {0} not in keychain".format(nodeID))
-            # return False
         else:
             if "sessionKey" in record.keys():
                 sessionKey = record["sessionKey"]
@@ -352,5 +342,5 @@ class Transport:
 
                 return data
             else:
-                logger.log(20, "Node {0} does not have session key".format(nodeID))
+                logger.warning("Node {0} does not have session key".format(onodeID))
                 return False

src/Cryptography/WhaleSong.rst

@@ -1,7 +1,7 @@
 
-WhaleSong: Diffie hellman ephemeral Fernet based encryption
-===========================================================
+WhaleSong
+=========
 
-.. autoclass:: Cryptography.WhaleSong.DHEFern
+.. autoclass:: Cryptography.WhaleSong.Transport
       :members:
       :undoc-members:

src/Daisy/Cache.py

@@ -1,17 +1,18 @@
 from Daisy.Daisy import Daisy
 
 import os
+import logging
 
 import msgpack
 
-from watchdog.observers import Observer
-
 # TODO: Dumping to cacheFile
 
 
+logger = logging.getLogger("__main__." + __name__)
+
 class Cache:
     """
-    In memory collection of Daisy records
+    In memory collection of Daisy records, provides a search functionality currently utilized by `Daisy.Catch.Catch`
 
     `🔗 Source <https://git.utopic.work/PierMesh/piermesh/src/branch/main/Daisy/Cache.py>`__
     """
@@ -22,26 +23,25 @@ class Cache:
         filepaths=None,
         cacheFile=None,
         path: str = "daisy",
-        walk: bool = False,
-        isCatch: bool = False,
+        walk: bool = False
     ):
         """
         Parameters
         ----------
+        daisyCryptography: Daisy.CryptographyUtil.SteelPetal
+            Record cryptography reference
+
         filepaths
             Either a list of filepaths to load or None
 
         cacheFile
-            Path to a cache file which is a collection of paths to load
+            Path to a cache file which is a collection of paths to load or None
 
         path: str
             Path prefix to load records from
 
         walk: bool
             Whether to automatically walk the path and load records
-
-        isCatch: bool
-            Whether this cache is for catchs
         """
         self.daisyCryptography = daisyCryptography
         self.data = {}
@@ -50,12 +50,13 @@ class Cache:
         if not os.path.exists(self.path):
             os.makedirs(self.path)
 
-        if filepaths != None:
+        if filepaths is not None:
             for fp in filepaths:
                 fp = path + "/" + fp
                 if os.path.isfile(fp):
                     self.data[fp] = Daisy(fp, daisyCryptography)
-        elif cacheFile != None:
+        elif cacheFile is not None:
+            self.cacheFile = cacheFile
             with open(cacheFile, "r") as f:
                 for fp in f.read().split("\n"):
                     self.data[fp] = Daisy(fp, daisyCryptography)
@@ -78,17 +79,23 @@ class Cache:
 
         data: dict
             Data to populate record with
+
+        remote: bool
+            Whether this is a reference to a distributed file (not implemented yet)
         """
-        if remote == False:
+        if not remote:
             with open(self.path + "/" + path, "wb") as f:
                 f.write(msgpack.dumps(data))
-            # logging.log(10, "Done creating record")
+            logger.debug("Done creating record")
             self.data[path] = Daisy(self.path + "/" + path, self.daisyCryptography)
-            # logging.log(10, "Done loading to Daisy")
+            logger.debug("Done loading to Daisy")
             return self.data[path]
         else:
-            self.data[path] = Ref(path, remote)
-            return self.data[path]
+            logger.debug("Not that (you shouldn't be here yet, remote Daisy links aren't ready yet)")
+            # TODO: Full remote path functionality
+            pass
+            # self.data[path] = Ref(path, remote)
+            # return self.data[path]
 
     def get(self, path: str):
         """
@@ -104,7 +111,8 @@ class Cache:
                 self.data[path] = Daisy(self.path + "/" + path, self.daisyCryptography)
                 return self.data[path]
             else:
-                # logging.log(10, "File does not exist")
+                path = self.path + "/" + path
+                logger.debug(f"File {path} does not exist")
                 return False
 
     def refresh(self):
@@ -116,18 +124,18 @@ class Cache:
 
     def search(self, keydict: dict, strict: bool = True):
         """
-        Search cache for record for records with values
+        Search cache for record for records with keys and values matching those
+        in the keydict
 
         keydict: dict
-            Values to search for
 
         strict: bool
-            Whether to require values match
+            Whether to require all keys/values match
         """
         results = []
         for key, val in self.data.items():
             val = val.get()
-            if strict and type(val) != str:
+            if strict and type(val) is not str:
                 addcheck = False
                 for k, v in keydict.items():
                     if k in val.keys():
@@ -138,7 +146,7 @@ class Cache:
                             break
                 if addcheck:
                     results.append([key, val])
-            elif type(val) != str:
+            elif type(val) is not str:
                 for k, v in keydict.items():
                     if k in val.keys():
                         if v in val[k]:

src/Daisy/Catch.py

@@ -1,9 +1,10 @@
+# NOTE: Local imports
 from Daisy.Cache import Cache
-from Daisy.Ref import Ref
+# from Daisy.Ref import Ref
 
+# NOTE: Generic imports
 import os
 import random
-import uuid
 
 
 class Catch(Cache):
@@ -26,7 +27,22 @@ class Catch(Cache):
         walk: bool = False,
     ):
         """
-        Basically the same initialization parameters as Catch
+        Parameters
+        ----------
+        path: str
+            Path prefix to load records from
+
+        daisyCryptography: Daisy.CryptographyUtil.SteelPetal
+            Record cryptography reference
+
+        filepaths
+            Either a list of filepaths to load or None
+
+        cacheFile
+            Path to a cache file which is a collection of paths to load or None
+
+        walk: bool
+            Whether to automatically walk the path and load records
         """
         super().__init__(
             daisyCryptography,
@@ -34,7 +50,6 @@ class Catch(Cache):
             cacheFile=catchFile,
             path=path,
             walk=walk,
-            isCatch=True,
         )
 
     # TODO: Fins
@@ -62,7 +77,7 @@ class Catch(Cache):
             List of (maximum 8 characters) strings at the end of the catch oe None if none
         """
         r = ""
-        if fins != None and fins != "":
+        if fins is not None and fins != "":
             r = self.search({"head": head, "body": body, "fins": fins})
         else:
             r = self.search({"head": head, "body": body})
@@ -73,16 +88,16 @@ class Catch(Cache):
 
     def addc(self, peer, node, seperator, head, body, data, fins=None, remote=False):
         tnpath = f"catch/{node}"
-        if os.path.exists(self.path + "/" + tnpath) != True:
+        if not os.path.exists(self.path + "/" + tnpath):
             os.makedirs(self.path + "/" + tnpath)
         tppath = tnpath + "/" + peer
-        if os.path.exists(self.path + "/" + tppath) != True:
+        if not os.path.exists(self.path + "/" + tppath):
             os.makedirs(self.path + "/" + tppath)
         sid = str(random.randrange(0, 999999)).zfill(6)
         data["seperator"] = seperator
         data["head"] = head
         data["body"] = body
-        if fins != None:
+        if fins is not None:
             data["fins"] = fins
         res = self.create("{0}/{1}".format(tppath, sid), data, remote=remote)
         return [sid, res]
@@ -91,7 +106,7 @@ class Catch(Cache):
         dirList = []
         for k, v in self.data.items():
             curCatch = {"remoteNode": onodeID}
-            if type(v.msg) != str:
+            if type(v.msg) is not str:
                 curCatch = curCatch | v.msg
                 del curCatch["html"]
                 dirList.append(curCatch)

src/Daisy/Credential.py

@@ -2,6 +2,9 @@ from Daisy.Daisy import Daisy
 
 
 class Credential(Daisy):
+    """
+    Currently unused credential class, will be fleshed out for credentialed access to the web ui
+    """
     def __init__(self, nodeNickname, credentialName, extension, daisyCryptography):
         fname = "data/{0}/{1}.{2}".format(nodeNickname, credentialName, extension)
         super().__init__(

src/Daisy/Credential.rst

@@ -0,0 +1,6 @@
+Credential
+==========
+
+.. autoclass:: Daisy.Credential.Credential
+      :members:
+      :undoc-members:

src/Daisy/CryptographyUtil.py

@@ -1,4 +1,7 @@
+# NOTE: Cryptography import
 from Crypto.Cipher import AES
+
+# NOTE: Generic imports
 import traceback
 import logging
 
@@ -7,9 +10,22 @@ logger = logging.getLogger("__main__." + __name__)
 
 
 class SteelPetal:
-    def __init__(self, key, nonce=None, testData=None):
+    """
+    Cryptography utility for encrypting files
+    """
+
+    def __init__(self, key: str, nonce=None, testData=None):
+        """
+        Parameters
+        ----------
+        key: str
+            User's plaintext key
+
+        nonce
+            Cryptographic artifact we can use to reinitialize cryptographic operations
+        """
         try:
-            if nonce == None:
+            if nonce is None:
                 self.cipher = AES.new(self.pad(key).encode("utf-8"), AES.MODE_GCM)
                 self.nonce = self.cipher.nonce
             else:
@@ -17,30 +33,48 @@ class SteelPetal:
                     self.pad(key).encode("utf-8"), AES.MODE_GCM, nonce=nonce
                 )
                 self.nonce = nonce
-            if testData != None:
+            if testData is not None:
                 try:
                     self.cipher.decrypt(testData)
-                except:
-                    logger.log(30, traceback.format_exc())
+                except Exception:
+                    logger.error(traceback.format_exc())
                     return False
-        except:
-            logger.log(30, traceback.format_exc())
+        except Exception:
+            logger.error(traceback.format_exc())
 
-    def pad(self, key):
+    def pad(self, key: str):
+        """
+        Pad key to make it usable
+
+        key: str
+            User's plain text key
+        """
         BS = AES.block_size
         key = key + (BS - len(key) % BS) * chr(BS - len(key) % BS)
         return key
 
-    def encrypt(self, data):
+    def encrypt(self, data: bytes):
+        """
+        Encrypt binary data
+
+        data: bytes
+            Data to encrypt
+        """
         try:
             return self.cipher.encrypt_and_digest(data)
-        except:
-            logger.log(20, traceback.format_exec())
+        except Exception:
+            logger.error(traceback.format_exec())
             return False
 
-    def decrypt(self, data):
+    def decrypt(self, data: bytes):
+        """
+        Decrypt encrypted binary data
+
+        data: bytes
+            Data to decrypt
+        """
         try:
             return self.cipher.decrypt(data)
-        except:
-            logger.log(20, traceback.format_exec())
+        except Exception:
+            logger.error(traceback.format_exec())
             return False

src/Daisy/CryptographyUtil.rst

@@ -0,0 +1,6 @@
+CryptographyUtil
+================
+
+.. autoclass:: Daisy.CryptographyUtil.SteelPetal
+      :members:
+      :undoc-members:

src/Daisy/Daisy.py

@@ -4,9 +4,6 @@ import msgpack
 import logging
 
 # TODO: delete
-# TODO: propagate json changes to msgpack automatically
-# TODO: propagate msgpack changes to cache automatically
-# TODO: Indexing
 
 logger = logging.getLogger("__main__." + __name__)
 
@@ -42,7 +39,6 @@ class Daisy:
         In memory representation
     """
 
-    # TODO: Strong encrypt
     def __init__(
         self,
         filepath: str,
@@ -64,30 +60,31 @@ class Daisy:
         template: bool
             Which template to Use
 
-        prefillDict: bool
-            Whether to fill the record with a template
+        prefillDict: dict
+            Data to prefill record with
         """
+        # TODO: Finish remote implementation
         self.remote = False
         self.filepath = filepath
-        if remote != False:
+        if remote:
             self.remote = True
             self.remoteNodeID = remote
         else:
-            if os.path.exists(filepath) != True:
+            if not os.path.exists(filepath):
                 with open(filepath, "wb") as f:
-                    if template != False:
+                    if template:
                         if template in templates.keys():
                             t = templates[template].get()
-                            if prefillDict != False:
+                            if prefillDict:
                                 for k in prefillDict.keys():
                                     t[k] = prefillDict[k]
                             f.write(msgpack.dumps(t))
                             self.msg = t
                         else:
-                            logger.log(20, "No such template as: " + template)
+                            logger.error("No such template as: " + template)
                     else:
                         t = {}
-                        if prefillDict != False:
+                        if prefillDict:
                             for k in prefillDict.keys():
                                 t[k] = prefillDict[k]
                         f.write(msgpack.dumps(t))
@@ -98,8 +95,6 @@ class Daisy:
                 with open(filepath, "rb") as f:
                     self.msg = msgpack.loads(f.read())
 
-    # Use override for updating
-
     def write(
         self,
         override=False,
@@ -108,7 +103,7 @@ class Daisy:
         recur: bool = False,
     ):
         """
-        Write record to disk
+        Write record to disk, note: use override with updated record to update record
 
         Parameters
         ----------
@@ -124,11 +119,11 @@ class Daisy:
         recur: bool
             Whether to recursively handle keys
         """
-        if override != False:
+        if override:
             for key in override.keys():
                 # TODO: Deeper recursion
                 if recur:
-                    if not key in self.msg.keys():
+                    if key not in self.msg.keys():
                         self.msg[key] = {}
                     for ikey in override[key].keys():
                         self.msg[key][ikey] = override[key][ikey]

src/Daisy/Index.py

@@ -2,15 +2,37 @@ from Daisy.Daisy import Daisy
 
 
 class Index(Daisy):
+    """
+    A searchable index of records, this is currently only half implemented
+    but works enough to hold our remote catch index
+    """
+
     def __init__(
         self,
-        nodeNickname,
+        nodeNickname: str,
         daisyCryptography,
-        prefill=[],
-        indexedFields=[],
-        autoIndex=True,
+        prefill: list = [],
+        indexedFields: list = [],
+        autoIndex: bool = True,
     ):
-        # TODO: Load from disk
+        """
+        Attributes
+        ----------
+        nodeNickname: str
+            Node nickname for record storage
+
+        daisyCryptography: Daisy.CryptographyUtil.SteelPetal
+            Record cryptography reference
+
+        prefill: list[dict]
+            List of objects to prefill the index with
+
+        indexedFields: list[str]
+            List of fields to index (what not to drop from a full record)
+
+        autoIndex: bool
+            Whether to automatically build the list of indexed fields present in the prefill objects
+        """
         if autoIndex:
             if prefill != []:
                 if indexedFields == []:
@@ -21,29 +43,36 @@ class Index(Daisy):
                             indexedFields.append(k)
                 indexedFields = list(set(indexedFields))
         super().__init__(
-            nodeNickname + ".index",
+            f"{nodeNickname}/daisy/{nodeNickname}.index",
             daisyCryptography,
             prefillDict={"_index": prefill, "_fields": indexedFields},
         )
 
-    def addEntry(self, entry):
+    def addEntry(self, entry: dict):
+        """
+        Add a record to the index
+
+        entry: dict
+            Record to add to the index
+        """
+        # TODO: Filter entry for only indexed fields
         index = self.msg["_index"]
         index.append(entry)
         self.write(override={"_index": index})
 
     def search(self, keydict: dict, strict: bool = True):
         """
-        Search cache for record for records with values
+        Search index for record for records with values
 
         keydict: dict
-            Values to search for
+            Keys/Values to search for
 
         strict: bool
-            Whether to require values match
+            Whether to require all keys/values match
         """
         results = []
         for ob in self.msg["_index"]:
-            if strict and type(ob) != str:
+            if strict and type(ob) is not str:
                 addcheck = False
                 for k, v in keydict.items():
                     if k in ob.keys():

src/Daisy/Index.rst

@@ -0,0 +1,6 @@
+Index
+=====
+
+.. autoclass:: Daisy.Index.Index
+      :members:
+      :undoc-members:

src/Daisy/Ref.py

@@ -2,5 +2,15 @@ from Daisy.Daisy import Daisy
 
 
 class Ref(Daisy):
-    def __init__(self, path, remoteNodeID):
-        super().__init__(path, remote=remoteNodeID)
+    """
+    Reference to a remote record
+
+    metadata: dict
+        Data to fill record with, should only be metadata
+
+    path: str
+        Where to store data locally
+    """
+
+    def __init__(self, metadata: dict, path: str, remoteNodeID: str):
+        super().__init__(path, remote=remoteNodeID, prefillDict=metadata)

src/Daisy/Ref.rst

@@ -0,0 +1,6 @@
+Ref
+===
+
+.. autoclass:: Daisy.Ref.Ref
+      :members:
+      :undoc-members:

src/Daisy/Soil.py

@@ -1,49 +0,0 @@
-from watchdog.observers import Observer
-from watchdog.events import FileSystemEventHandler
-
-global garden
-"""
-Map of instances to list of signals
-to be processed
-"""
-garden = {}
-
-
-class Compound(FileSystemEventHandler):
-    """
-    File system watcher to propagate disk changes
-
-    `🔗 Source <https://git.utopic.work/PierMesh/piermesh/src/branch/main/Daisy/Soil.py>`__
-    """
-
-    def __init__(self, cache, isCatch: bool = False):
-        """
-        Parameters
-        ----------
-        cache: Cache
-            Daisy cache to update
-
-        isCatch: bool
-            Is the cache for catchs
-        """
-        self.cache = cache
-        self.isCatch = isCatch
-        super().__init__()
-
-    def on_any_event(self, event):
-        """
-        Called when a CRUD operation is performed on a record file
-
-        Parameters
-        ----------
-        event
-            Event object provided by watchdog
-        """
-        if not (".json" in event.src_path):
-            if not (".md" in event.src_path):
-                tpath = "/".join(event.src_path.split("/")[1:])
-                if tpath != "":
-                    if self.isCatch:
-                        self.cache.sget(tpath)
-                    else:
-                        self.cache.get(tpath).get()

src/Daisy/Soil.rst

@@ -1,6 +0,0 @@
-Soil: Daisy signal management
-=============================
-
-.. autoclass:: Daisy.Soil.Compound
-      :members:
-      :undoc-members:

src/Daisy/Store.py

@@ -6,28 +6,71 @@ import traceback
 
 logger = logging.getLogger("__main__." + __name__)
 
-# TODO: Higher priority erros
 
 class Store(Daisy):
     """
     Key value store
 
-    `🔗 Source <https://git.utopic.work/PierMesh/piermesh/src/branch/main/Daisy/Store.py>`__
-    """
+    `🔗 Source <https://git.utopic.work/PierMesh/piermesh/src/branch/main/Daisy/Store.py>`_
 
+    Attributes
+    ----------
+
+    epehemeral: dict
+        Memory only records
+    """
     def __init__(self, store: str, path: str, nodeNickname: str, daisyCryptography):
-        fpath = "daisy/{0}/{1}".format(path, nodeNickname)
-        cpath = "{0}/{1}/{2}".format(path, nodeNickname, store)
+        """
+        Parameters
+        ----------
+        store: str
+            Store name/filename
+
+        path: str
+            Folder record should be in
+
+        nodeNickname: str
+            Node nickname for record storage
+
+        daisyCryptography: Daisy.CryptographyUtil.SteelPetal
+            Record cryptography reference
+        """
+        fpath = f"{nodeNickname}/daisy/{path}"
+        cpath = f"{fpath}/{store}"
         if not os.path.exists(fpath):
             os.mkdir(fpath)
-        super().__init__("daisy/" + cpath, daisyCryptography)
+        super().__init__(cpath, daisyCryptography)
         self.ephemeral = {}
 
-    def createEmpty(self, key):
+    def createEmpty(self, key: str):
+        """
+        Parameters
+        ----------
+        Create empty record at the given key
+
+        key: str
+            Key to create empty record at
+        """
         self.msg[key] = {}
 
-    # TODO: Update usages of update where necessary to keep out of mem
     def update(self, entry: str, data, recur: bool = True, write=True):
+        """
+        Update given record
+
+        Parameters
+        ----------
+        entry: str
+            Key to update record of
+
+        data
+            Data to update record with
+
+        recur: bool
+            Whether to iterate over data
+
+        write: bool
+            Whether record is ephemeral
+        """
         if write:
             if recur:
                 if entry not in self.msg.keys():
@@ -47,19 +90,29 @@ class Store(Daisy):
                 self.ephemeral[entry] = data
 
     def getRecord(self, key: str, ephemeral=False):
-        logger.log(30, key)
+        """
+        Get record at key
+        
+        Parameters
+        ----------
+        key: str
+
+        ephemeral: bool
+            Whether key is only in memory, used for session cryptography credentials currently    
+        """
+        logger.debug(key)
         try:
             if ephemeral:
                 if key in self.ephemeral.keys():
                     return self.ephemeral[key]
                 else:
-                    logger.log(20, "Record does not exist")
+                    logger.info("Record does not exist")
                     return False
             else:
                 if key in self.get().keys():
                     return self.get()[key]
                 else:
-                    logger.log(20, "Record does not exist")
+                    logger.info("Record does not exist")
                     return False
         except Exception:
-            logger.log(30, traceback.format_exc())
+            logger.warning(traceback.format_exc())

src/Packets/HeaderPacket.py

@@ -30,7 +30,7 @@ class Header(Packet):
         Whether a response should be sent when the message completes reception (TODO)
 
     pAction: int
-        3 digit (maximum) pAction ID for mapping precise actions within a protocol (TODO)
+        3 digit (maximum) pAction ID for mapping precise actions within a protocol
     """
 
     def __init__(
@@ -42,12 +42,23 @@ class Header(Packet):
         sourceNode: int,
         recipient: int,
         recipientNode: int,
-        subpacket: bool = False,
         wantFullResponse: bool = False,
         packetsClass: int = 0,
         pAction: int = -1,
         target=True,
     ):
+        """
+        Arguments
+        ---------
+        sourceNode: int
+            Source of request
+
+        packetsClass: int
+            Integer ID matching the class of the message
+
+        target
+            Whether the message is being sent to a target, if so, where
+        """
         super().__init__(
             b"", packetsID=packetsID, packetCount=packetCount, packetsClass=packetsClass
         )
@@ -60,7 +71,6 @@ class Header(Packet):
         else:
             self.recipient = -1
             self.recipientNode = -1
-        # TODO: Populating with submessage ids
         self.submessages = []
         self.wantFullResponse = wantFullResponse
         self.pAction = pAction
@@ -69,7 +79,7 @@ class Header(Packet):
 
     def usePreset(self, path: str, daisyCryptography):
         """
-        Add preset fields to the packet
+        Add preset fields to the packet, currently unused
         """
         preset = Daisy(path, daisyCryptography)
         for key in preset.get().keys():

src/Packets/Message.py

@@ -44,7 +44,6 @@ class Message:
         primaryMessage=None,
         pskEncrypt=False
     ):
-        # TODO: PSK for usage prior to credentials
         """
         Parameters
         ----------
@@ -57,20 +56,41 @@ class Message:
         senderDisplayName: int
             3 digit (maximum) ID for mapping display names to a given user
 
+        sourceNode: int
+            Source of request
+
         recipient: int
             6 digit (maximum) node or peer ID
 
         recipientNode: int
             6 digit (maximum) node ID to route the packet to
 
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        packetsClass: int
+            Which protocol the packets are using
+
+        pAction: int
+            3 digit (maximum) pAction ID for mapping precise actions within a protocol
+
         dataSize: int
             Size to cut the bytesObject into per packet
 
         wantFullResponse: bool
             Whether to send a response when the message has completed reception (TODO: Kill all retries for associated packets when received)
 
-        packetsClass: int
-            Which protocol the packets are using
+        target
+            Whether the message is being sent to a target, if so, where
+
+        subMessage: bool
+            Whether this is a submessage
+
+        primaryMessage
+            Primary message this is a submessage to, if this is a submessage
+
+        pskEncrypt: bool
+            Whether to encrypt the message with the pre shared key
         """
         self.recipientNode = recipientNode
         self.target = target
@@ -90,28 +110,25 @@ class Message:
                 )
             self.packets = packets
         else:
-            # Data passed in by peers should already have been e2ee encrypted by SubtleCrypto
-            # Transport encryption
-            # bytesObject = lzma.compress(bytesObject, str(recipientNode).zfill(6), isDict=False)
+            # TODO: Data passed in by peers should already have been e2ee encrypted by SubtleCrypto
             if subMessage == False:
                 bytesObject, nonce, tag = cryptographyInfo.encrypt(
                     bytesObject, str(recipientNode).zfill(6), isDict=False, pskEncrypt=pskEncrypt
                 )
-                logger.log(10, bytesObject)
+                # logger.debug(bytesObject)
                 self.nonce = nonce
                 self.tag = tag
             packets = []
             self.packetsID = random.randrange(0, 999999)
             pnum = 1
-            # if subMessage:
             dataSize = 80
             blen = math.ceil(len(bytesObject) / dataSize)
             tb = b""
             for it in range(blen):
                 if it >= (blen - 1):
-                    b = bytesObject[it * dataSize :]
+                    b = bytesObject[it * dataSize:]
                 else:
-                    b = bytesObject[it * dataSize : (it * dataSize + dataSize)]
+                    b = bytesObject[it * dataSize: (it * dataSize + dataSize)]
                 if subMessage:
                     packets.append(
                         p.Packet(
@@ -168,31 +185,45 @@ class Message:
 
     def reassemble(self, completedMessage: dict, cryptographyInfo, subMessage=False, yctx=None, packetCount=None):
         """
-        Reassemble packets from a completed message in `Sponge.base`
+        Reassemble packets from a completed message in `Sponge.base`, meant to be used without instantiation
+
+        Arguments
+        ---------
+        completedMessage: dict
+            All parts of the message and submessage
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        subMessage: bool
+            Whether this is a submessage
+
+        yctx
+            Message parsing context
+
+        packetCount
+            Number of packets
         """
         data = b""
         sourceNode = None
-        # TODO: Fix reassembly for primary
         if subMessage:
             sourceNode = yctx["sourceNode"]["val"]
             for it in range(1, packetCount+1):
                 data += completedMessage["data"][completedMessage["dataOrder"].index(it)]
             data = msgpack.loads(lzma.decompress(data))
-            logger.log(10, data)
-            logger.log(10, completedMessage["data"])
-            logger.log(10, completedMessage["dataOrder"])
+            # logger.debug(data)
+            # logger.debug(completedMessage["data"])
+            # logger.debug(completedMessage["dataOrder"])
         else:
-            # TODO: Cryptography setup
             packetCount = int(completedMessage.yctx["packetCount"]["val"])
             sourceNode = completedMessage.yctx["sourceNode"]["val"]
-            logger.log(10, completedMessage.data)
+            # logger.debug(completedMessage.data)
             for it in range(1, packetCount):
                 if it in completedMessage.dataOrder:
                     data += completedMessage.data[completedMessage.dataOrder.index(it)]
-            logger.log(10, "pre decrypt")
-            logger.log(10, data)
+            # logger.debug("pre decrypt")
+            # logger.debug(data)
             data = cryptographyInfo.decrypt(
                 data, sourceNode, completedMessage.nonce, completedMessage.tag
             )
-            # data = msgpack.loads(lzma.decompress(data))
         return data

src/Packets/Messages/Protocols/bubble/Bubble.py

@@ -3,6 +3,10 @@ import Packets.Message
 
 
 class Bubble(Message):
+    """
+    Send data from peer to peer
+    """
+
     def __init__(
         self,
         sender,
@@ -13,6 +17,30 @@ class Bubble(Message):
         cryptographyInfo,
         data,
     ):
+        """
+        Parameters
+        ----------
+        sender
+            6 digit (maximum) node or peer ID
+
+        senderID
+            3 digit (maximum) ID for mapping display names to a given user
+
+        sourceNode: int
+            Source of request
+
+        recipient
+            6 digit (maximum) recipient peer ID
+
+        recipientNode
+            6 digit (maxmium) recipient node ID
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        data
+            Data to send to peer
+        """
         bytesOb = Packets.Message.dict2bytes({"data": data, "recipient": recipient, "target": "bubble"})
         super().__init__(
             bytesOb,

src/Packets/Messages/Protocols/bubble/Bubble.rst

@@ -0,0 +1,6 @@
+bubble.Bubble
+=============
+
+.. autoclass:: Packets.Messages.Protocols.bubble.Bubble.Bubble
+      :members:
+      :undoc-members:

src/Packets/Messages/Protocols/catch/IndexSync.py

@@ -3,6 +3,9 @@ import Packets.Message
 
 
 class IndexSync(Message):
+    """
+    Sync indices of Catchs across nodes
+    """
     def __init__(
         self,
         sender,
@@ -14,6 +17,33 @@ class IndexSync(Message):
         index,
         target=False
     ):
+        """
+        Parameters
+        ----------
+        sender
+            6 digit (maximum) node or peer ID
+
+        senderID
+            3 digit (maximum) ID for mapping display names to a given user
+
+        sourceNode: int
+            Source of request
+
+        recipient
+            6 digit (maximum) recipient peer ID
+
+        recipientNode
+            6 digit (maxmium) recipient node ID
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        index: dict
+            Index of catch's to sync across nodes
+
+        target: bool
+            Whether to send this to a specific target (str) or just broadcast (False)
+        """
         bytesOb = Packets.Message.dict2bytes({"index": index})
         super().__init__(
             bytesOb,

src/Packets/Messages/Protocols/catch/IndexSync.rst

@@ -0,0 +1,6 @@
+catch.IndexSync
+===============
+
+.. autoclass:: Packets.Messages.Protocols.catch.IndexSync.IndexSync
+      :members:
+      :undoc-members:

src/Packets/Messages/Protocols/catch/Request.py

@@ -3,6 +3,10 @@ import Packets.Message
 
 
 class CatchRequest(Message):
+    """
+    Request Catch (website) from another node
+    """
+
     def __init__(
         self,
         sender,
@@ -16,6 +20,39 @@ class CatchRequest(Message):
         fins,
         pskEncrypt=False
     ):
+        """
+        Parameters
+        ----------
+        sender
+            6 digit (maximum) node or peer ID
+
+        senderID
+            3 digit (maximum) ID for mapping display names to a given user
+
+        sourceNode: int
+            Source of request
+
+        recipient
+            6 digit (maximum) recipient peer ID
+
+        recipientNode
+            6 digit (maxmium) recipient node ID
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        head: str
+            First part of the Catch (4 characters max)
+
+        body: str
+            Second part of the Catch (8 characters max)
+
+        fins: list[str]
+            Last part of the Catch (6 characters max each)
+
+        pskEncrypt: bool
+            Whether to encrypt with PSK
+        """
         bytesOb = Packets.Message.dict2bytes({"head": head, "body": body, "fins": fins, "recipient": sender, "recipientNode": sourceNode})
         super().__init__(
             bytesOb,

src/Packets/Messages/Protocols/catch/Request.rst

@@ -0,0 +1,6 @@
+catch.Request
+=============
+
+.. autoclass:: Packets.Messages.Protocols.catch.Request.CatchRequest
+      :members:
+      :undoc-members:

src/Packets/Messages/Protocols/catch/Response.py

@@ -3,6 +3,10 @@ import Packets.Message
 
 
 class CatchResponse(Message):
+    """
+    Send local Catch (website) to user who requested it
+    """
+
     def __init__(
         self,
         sender,
@@ -14,6 +18,33 @@ class CatchResponse(Message):
         html,
         pskEncrypt=False
     ):
+        """
+        Parameters
+        ----------
+        sender
+            6 digit (maximum) node or peer ID
+
+        senderID
+            3 digit (maximum) ID for mapping display names to a given user
+
+        sourceNode: int
+            Source of request
+
+        recipient
+            6 digit (maximum) recipient peer ID
+
+        recipientNode
+            6 digit (maxmium) recipient node ID
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        html
+            Contents of Catch to send back
+
+        pskEncrypt:
+            Whether to encrypt with PSK
+        """
         bytesOb = Packets.Message.dict2bytes({"html": html, "recipient": recipient, "target": "catch"})
         super().__init__(
             bytesOb,

src/Packets/Messages/Protocols/catch/Response.rst

@@ -0,0 +1,6 @@
+catch.Response
+==============
+
+.. autoclass:: Packets.Messages.Protocols.catch.Response.CatchResponse
+      :members:
+      :undoc-members:

src/Packets/Messages/Protocols/cryptography/Handshake.py

@@ -1,20 +1,45 @@
 from Packets.Message import Message
 import Packets.Message
 
-# TODO: Send with psk encryption
 
 class Handshake(Message):
+    """
+    Provides the ephemeral key for session encryption
+    """
+
     def __init__(
         self, sender, senderID, recipient, recipientNode, cryptographyInfo, onodeID, sourceNode
     ):
-        publicKey = None
+        """
+        Parameters
+        ----------
+        sender
+            6 digit (maximum) node or peer ID
+
+        senderID
+            3 digit (maximum) ID for mapping display names to a given user
+
+        sourceNode: int
+            Source of request
+
+        recipient
+            6 digit (maximum) recipient peer ID
+
+        recipientNode
+            6 digit (maxmium) recipient node ID
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        onodeID
+            Node identifier for current node
+
+        sourceNode
+            Source of request
+        """
         ephemeralKey = None
         record = cryptographyInfo.getRecord("key", "self")
-        if record != False:
-            if "publicKey" in record.keys():
-                publicKey = record["publicKey"]
-            else:
-                raise Exception("Public key missing for node")
+        if record:
             if "ourEphemeralKey" in record.keys():
                 ephemeralKey = record["ourEphemeralKey"]
             else:

src/Packets/Messages/Protocols/cryptography/Handshake.rst

@@ -0,0 +1,6 @@
+cryptography.Handshake
+======================
+
+.. autoclass:: Packets.Messages.Protocols.cryptography.Handshake.Handshake
+      :members:
+      :undoc-members:

src/Packets/Messages/Protocols/hopper/Request.py

@@ -3,6 +3,10 @@ import Packets.Message
 
 
 class HopperRequest(Message):
+    """
+    Proxy request to main internet from remote node
+    """
+
     def __init__(
         self,
         sender,
@@ -10,11 +14,42 @@ class HopperRequest(Message):
         sourceNode,
         recipient,
         recipientNode,
-        url,
-        params,
-        method,
+        url: str,
+        params: dict,
+        method: str,
         cryptographyInfo,
     ):
+        """
+        Parameters
+        ----------
+        sender
+            6 digit (maximum) node or peer ID
+
+        senderID
+            3 digit (maximum) ID for mapping display names to a given user
+
+        sourceNode: int
+            Source of request
+
+        recipient
+            6 digit (maximum) recipient peer ID
+
+        recipientNode
+            6 digit (maxmium) recipient node ID
+
+        url: str
+            URL to parse
+
+        params: dict
+            Parameters to add to the request for the URL
+
+        method: str
+            Method to use for request (GET/POST currently)
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        """
         bytesOb = Packets.Message.dict2bytes({"url": url, "parameters": params, "method": method, "recipient": sender, "recipientNode": sourceNode})
         super().__init__(
             bytesOb,

src/Packets/Messages/Protocols/hopper/Request.rst

@@ -0,0 +1,6 @@
+hopper.Request
+==============
+
+.. autoclass:: Packets.Messages.Protocols.hopper.Request.HopperRequest
+      :members:
+      :undoc-members:

src/Packets/Messages/Protocols/hopper/Response.py

@@ -3,12 +3,38 @@ import Packets.Message
 
 
 class HopperResponse(Message):
+    """
+    Send proxied request back to requester
+    """
+
     def __init__(
         self, sender, senderID, sourceNode, recipient, recipientNode, response, cryptographyInfo
     ):
-        bytesOb = Packets.Message.dict2bytes({"res": response, "recipient": recipient, "target": "hopper"})
+        """
+        Parameters
+        ----------
+        sender
+            6 digit (maximum) node or peer ID
 
-        # bytesOb = cryptographyInfo.encrypt(bytesOb, recipientNode)
+        senderID
+            3 digit (maximum) ID for mapping display names to a given user
+
+        sourceNode: int
+            Source of request
+
+        recipient
+            6 digit (maximum) recipient peer ID
+
+        recipientNode
+            6 digit (maxmium) recipient node ID
+
+        response
+            Data from proxied request
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+        """
+        bytesOb = Packets.Message.dict2bytes({"res": response, "recipient": recipient, "target": "hopper"})
 
         super().__init__(
             bytesOb,

src/Packets/Messages/Protocols/hopper/Response.rst

@@ -0,0 +1,6 @@
+hopper.Response
+===============
+
+.. autoclass:: Packets.Messages.Protocols.hopper.Response.HopperResponse
+      :members:
+      :undoc-members:

src/Packets/Messages/Protocols/map/Announce.py

@@ -5,9 +5,12 @@ import logging
 
 logger = logging.getLogger("__main__." + __name__)
 
-# TODO: Add public key
 
 class AnnounceMessage(Message):
+    """
+    Announce the network map details and public key of the node for discovery
+    """
+
     def __init__(
         self,
         sender,
@@ -16,12 +19,30 @@ class AnnounceMessage(Message):
         cryptographyInfo,
         mapping,
     ):
+        """
+        Parameters
+        ----------
+        sender
+            6 digit (maximum) node or peer ID
+
+        senderID
+            3 digit (maximum) ID for mapping display names to a given user
+
+        sourceNode: int
+            Source of request
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        mapping: dict
+            Network map
+        """
         mapping["publicKey"] = cryptographyInfo.getRecord("key", "self")["publicKey"]
         recipient = -1
         recipientNode = -1
         bytesOb = Packets.Message.dict2bytes(mapping)
-        logger.log(10, "Mapping bytes")
-        logger.log(10, bytesOb)
+        # logger.debug(10, "Mapping bytes")
+        # logger.debug(10, bytesOb)
         super().__init__(
             bytesOb,
             sender,

src/Packets/Messages/Protocols/map/Announce.rst

@@ -0,0 +1,6 @@
+map.Announce
+============
+
+.. autoclass:: Packets.Messages.Protocols.map.Announce.AnnounceMessage
+      :members:
+      :undoc-members:

src/Packets/Packet.py

@@ -34,7 +34,7 @@ class Packet:
         packetsClass: int = -1,
         primaryMessage=None,
     ):
-        if packetsID == False:
+        if not packetsID:
             self.packetsID, self.packetNumber, self.data, self.packetsClass = (
                 self.parsePayload(data)
             )
@@ -69,8 +69,7 @@ class Packet:
         }
         if res["data"] == "":
             res.pop("data")
-        if self.primaryMessage != None:
+        if self.primaryMessage is not None:
             res["primaryMessage"] = self.primaryMessage
         ores = msgpack.dumps(res)
-        # logging.log(20, "Packet size: " + str(sys.getsizeof(ores)))
         return ores

src/Packets/SinglePacket.py

@@ -2,9 +2,6 @@ from .Packet import Packet
 import msgpack
 import lzma
 
-# TODO: Instantiation
-# TODO: Packet template loading
-
 
 class SinglePacket(Packet):
     """

src/Packets/SubMessage.py

@@ -5,7 +5,12 @@ import logging
 
 logger = logging.getLogger("__main__." + __name__)
 
+
 class SubMessage(Message):
+    """
+    SubMessage to a primary message, enables us to send more/dynamic data
+    """
+
     def __init__(
         self,
         sender,
@@ -20,9 +25,54 @@ class SubMessage(Message):
         target=True,
         primaryMessage=None
     ):
+        """
+        Parameters
+        ----------
+        bytesObject: bytes
+            Bytes to split into packets
+
+        sender: int
+            6 digit (maximum) node or peer ID
+
+        senderDisplayName: int
+            3 digit (maximum) ID for mapping display names to a given user
+
+        sourceNode: int
+            Source of request
+
+        recipient: int
+            6 digit (maximum) node or peer ID
+
+        recipientNode: int
+            6 digit (maximum) node ID to route the packet to
+
+        cryptographyInfo: Cryptography.WhaleSong.DHEFern
+            Cryptography instance for encrypting message
+
+        packetsClass: int
+            Which protocol the packets are using
+
+        pAction: int
+            3 digit (maximum) pAction ID for mapping precise actions within a protocol
+
+        dataSize: int
+            Size to cut the bytesObject into per packet
+
+        wantFullResponse: bool
+            Whether to send a response when the message has completed reception (TODO: Kill all retries for associated packets when received)
+
+        target
+            Whether the message is being sent to a target, if so, where
+
+        subMessage: bool
+            Whether this is a submessage
+
+        primaryMessage
+            Primary message this is a submessage to, if this is a submessage
+        """
         bytesOb = Packets.Message.dict2bytes(data)
-        logger.log(10, "Submessage bytes")
-        logger.log(10, bytesOb)
+        # logger.debug("Submessage bytes")
+        # logger.debug(bytesOb)
         super().__init__(
             bytesOb,
             sender,

src/Packets/SubPacket.rst

@@ -1,5 +1,5 @@
 SubPacket: Packets for submessages
 ==================================
 
-.. autoclass:: Packets.SubPacket.SubPacket
+.. autoclass:: Packets.SubMessage.SubMessage
       :members:

src/Services/Action.py

@@ -1,4 +1,35 @@
 class Action:
+    """
+    Generic action class for triggering actions from sub processes on the main thread
+
+    `🔗 Source <https://git.utopic.work/PierMesh/piermesh/src/branch/main/Services/Action.py>`_
+
+    Attributes
+    ----------
+
+    action: str
+        Action to run
+
+    data: dict
+        Data to pass to action
+
+    sender: str
+        Sender identifier
+
+    senderID: str
+        Sender second level identifier
+
+    sourceNode: str
+        Sending node
+
+    recipient: str
+        Peer identifier to route to
+
+    recipientNode:
+        Intended destination node identifier
+    """
+    # TODO: Utilize the attributes here to skip over doing it manually
+
     def __init__(
         self,
         action,
@@ -11,19 +42,19 @@ class Action:
     ):
         self.action = action
         self.data = data
-        if sender != None:
+        if sender is not None:
             self.data["sender"] = sender
 
-        if senderID != None:
+        if senderID is not None:
             self.data["senderID"] = senderID
 
-        if sourceNode != None:
+        if sourceNode is not None:
             self.data["sourceNode"] = sourceNode
 
-        if recipient != None:
+        if recipient is not None:
             self.data["recipient"] = recipient
 
-        if recipientNode != None:
+        if recipientNode is not None:
             self.data["recipientNode"] = recipientNode
 
     def getAction(self):

src/Services/Action.rst

@@ -0,0 +1,6 @@
+Services.Action
+===============
+
+.. autoclass:: Services.Action.Action
+      :members:
+      :undoc-members:

src/Splash/serve.py

@@ -1,10 +1,11 @@
-from uuid import uuid4
+# NOTE: Local imports
 import Components.hopper as hopper
 from Packets.Messages.Protocols.catch.Request import CatchRequest
 from Packets.Messages.Protocols.catch.IndexSync import IndexSync
 from Packets.Messages.Protocols.hopper.Request import HopperRequest
 from Packets.Messages.Protocols.bubble.Bubble import Bubble
 
+# NOTE: Server imports
 from microdot import Microdot
 from microdot import send_file
 from microdot.websocket import with_websocket, WebSocketError
@@ -12,6 +13,7 @@ from microdot import Request
 from microdot.jinja import Template
 from microdot.session import Session, with_session
 
+# NOTE: Generic imports
 import random
 import json
 import time
@@ -19,13 +21,11 @@ import logging
 import traceback
 import uuid
 import re
-
-import msgpack
-
+from uuid import uuid4
 
 logger = logging.getLogger("__main__." + __name__)
 
-# Enable 500 kB files in the webui
+# Enable 1 mB files in the webui
 Request.max_content_length = 1024 * 1024 * 0.5
 Request.max_body_length = 1024 * 1024 * 0.5
 Request.max_readline = 1024 * 1024
@@ -39,11 +39,8 @@ class Server:
 
     Attributes
     ----------
-    cLog
-        Reference to `run.Node.cLog` for logging
-
-    transmitter: Transmission.transmission.Transmitter
-        Reference to our `Transmission.transmission.Transmitter` instance
+    transceiver: Transceiver.Transceiver.Transceiver
+        Reference to our `Transceiver.Transceiver.Transceiver` instance
 
     network: Siph.Network.Network
         Reference to our `Siph.Network.Network`
@@ -71,6 +68,30 @@ class Server:
         remoteCatchIndex,
         cache,
     ):
+        """
+        Parameters
+        ----------
+        transceiver: Transceiver.Transceiver.Transceiver
+            Reference to our `Transceiver.Transceiver.Transceiver` instance
+
+        catch: Daisy.Catch.Catch
+            Reference to our Catch Cache instance to pull from for serving Catchs
+
+        nodeID: str
+            String converted PierMesh node ID
+
+        network: Siph.Network.Network
+            Reference to our `Siph.Network.Network`
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting messagei
+
+        remoteCacheIndex: Daisy.Index.Index
+            Reference to our index of remote Catch's to pull from
+
+        cache: Daisy.Cache.Cache
+            Reference to our on disk files
+        """
         self.transceiver = transceiver
         self.network = network
         self.network.syncaddLookup(onodeID, self.transceiver.interface.localNode.nodeNum)
@@ -92,7 +113,7 @@ class Server:
             Static resources endpoint
             """
             if ".." in path:
-                # directory traversal is not allowed
+                # NOTE: Directory traversal is not allowed
                 return "Not found", 404
             return send_file("Splash/build/res/" + path, max_age=86400)
 
@@ -103,42 +124,49 @@ class Server:
             """
             try:
                 return send_file("Splash/build/index/index.html")
-            except Exception as e:
+            except Exception:
                 logger.error(traceback.format_exc())
                 return "Server error", 500
 
         @self.app.route("/hop/<tmpResourceID>")
         async def hop(request, tmpResourceID):
+            """
+            Static handler to serve files from Hopper requests temporarily
+            """
             try:
                 return self.cache.get("tmp/hopper/" + tmpResourceID).get()["html"]
-            except Exception as e:
+            except Exception:
                 logger.error(traceback.format_exc())
                 return "Server error", 500
 
         @self.app.route("/api/json")
         async def api(request):
+            """
+            Currently just a test json api endpoint that returns {"hello": "world"}
+            """
             try:
                 return {"hello": "world"}
-            except Exception as e:
+            except Exception:
                 logger.error(traceback.format_exc())
                 return "Server error", 500
 
         @self.app.route("/admin")
         @with_session
         async def admin(request):
+            """
+            Static endpoint for the Admin interface, currently only displays our PSKs
+            """
             try:
                 return Template("Splash/admin/admin.html").render(psks=self.getPSKs())
-            except Exception as e:
+            except Exception:
                 logger.error(traceback.format_exc())
                 return "Server error", 500
 
-
-
         @self.app.route("/bubble")
         @with_websocket
         async def bubble(request, ws):
             """
-            Websocket handler that bridges HTMX to our transmitter
+            Websocket handler that bridges HTMX to our transmitter for client side PierMesh operations
 
             Notes
             -----
@@ -148,7 +176,7 @@ class Server:
                 try:
                     r = await ws.receive()
                     message = json.loads(r)
-                    #logger.debug(json.dumps(message, indent=4))
+                    # logger.debug(json.dumps(message, indent=4))
                     trigger = message["HEADERS"]["HX-Trigger"]
                     logger.debug(f"Trigger: {trigger}")
                     # TODO: Drop old id from cache on regen
@@ -216,7 +244,7 @@ class Server:
                             message["body"],
                             fins=message["finsStr"].split(","),
                         )
-                        if res == False:
+                        if not res:
                             await ws.send(
                                 '<div id="catchDisplay">{0}</div>'.format(
                                     "Searching PierMesh for Catch please wait...<img src='/res/img/searching.gif'>"
@@ -235,7 +263,7 @@ class Server:
                                     fins = message["fins"]
                             # TODO: Handling multiple results
                             q = self.remoteCatchIndex.search(q)[0]
-                            if q != False:
+                            if q:
                                 m = CatchRequest(
                                     peerID,
                                     000000,
@@ -347,24 +375,26 @@ class Server:
                         await ws.send(
                             """<div id="chat_room" hx-swap-oob="beforeend">hi</div>"""
                         )
-                except WebSocketError as e:
+                except WebSocketError:
                     pass
 
                     # Uncomment below for WebSocket debugging
                     logger.debug(traceback.format_exc())
                     return "Server error", 500
-                except Exception as e:
+                except Exception:
                     logger.error(traceback.format_exc())
                     return "Server error", 500
 
     async def getPSKs(self):
+        """
+        Get all PSKs for display
+        """
         psks = [
             {"psk": v["PSK"], "nodeID": k}
             for k, v in self.cryptographyInfo["msg"].items()
         ]
         return psks
 
-    # TODO: Send catch to catch display
     async def sendToPeer(self, peerID: str, data: str, target: str):
         """
         Send data to Websocket of peer with peerID

src/Splash/serve.rst

@@ -1,5 +1,5 @@
 serve: Web UI server
-============================
+====================
 
 .. autoclass:: Splash.serve.Server
     :members:

src/Sponge/Protocols/Yellow.py

@@ -8,6 +8,10 @@ logger = logging.getLogger("__main__." + __name__)
 
 
 class YCTX(Context):
+    """
+    Context data structure for message parsing
+    """
+
     def __init__(
         self,
         packetsID,
@@ -21,6 +25,37 @@ class YCTX(Context):
         submessagesIDs=[],
         eData=None,
     ):
+        """
+        packetsID: int
+            Identifier for message
+
+        packetCount: int
+            Number of packets in message
+
+        pAction: str
+            Action to execute after parsing
+
+        todo
+            Queue of actions to execute in the main loop
+
+        cryptographyInfo: Cryptography.WhaleSong.Transport
+            Cryptography instance for encrypting message
+
+        sourceNode: int
+            Source of request
+
+        subMessage: bool
+            Whether this is a submessage
+
+        subMessages: dict
+            Dict of parsed submessages of primary message
+
+        submessagesIDs: list
+            List of required submessages to complete full message
+
+        eData
+            Any extra data
+        """
         super().__init__(
             sourceNode=sourceNode,
             packetsID=packetsID,
@@ -36,13 +71,56 @@ class YCTX(Context):
 
 
 class Yellow:
-    # TODO: Submessage completion actions
+    """
+    Message parser that's subclassed to easily make parsers for specific protocols
+
+    Attributes
+    ----------
+    yctx: YCTX
+        Message parsing context
+
+    message
+
+    submessages: dict
+        Dictionary of submessages
+
+    submessagesIDs: list
+        List of required submessages
+
+    finishedSubmessages: dict
+        Dictionary of finished submessages
+
+    dataOrder: list
+        List that maps packets based on their received order
+
+    data: list
+        Data of primary message
+
+    nonce
+        Cryptography artifact for decrypting message
+
+    tag
+        Cryptography artifact for decrypting message
+
+    gotHead: bool
+        Whether we've gotten the head/header packet
+
+    todo
+        Queue of actions to execute in the main loop
+
+    """
     pActions = []
 
     def __init__(
         self,
         yctx: YCTX,
     ):
+        """
+        Parameters
+        ----------
+        yctx: YCTX
+            Message parsing context
+        """
         self.yctx = yctx
         self.message = None
         self.submessages = yctx["subMessages"]["val"]
@@ -54,7 +132,7 @@ class Yellow:
         self.tag = None
         self.gotHead = False
         self.todo = yctx.todo
-        if yctx["eData"]["val"] != None:
+        if yctx["eData"]["val"] is not None:
             self.dataOrder = yctx["eData"]["val"]["dataOrder"]
             self.data = yctx["eData"]["val"]["data"]
 

src/Sponge/Protocols/Yellow.rst

@@ -0,0 +1,10 @@
+Sponge.Protocols.Yellow
+=======================
+
+.. autoclass:: Sponge.Protocols.Yellow.YCTX
+      :members:
+      :undoc-members:
+
+.. autoclass:: Sponge.Protocols.Yellow.Yellow
+      :members:
+      :undoc-members:

src/Sponge/Protocols/bubble.py

@@ -3,6 +3,7 @@ from Sponge.Protocols.Yellow import Yellow
 # TODO: Forwarding message to next node
 # TODO: Method to get next node in path to recipient node
 
+
 class Bubble(Yellow):
     """
     Peer to peer protol

src/Sponge/Protocols/bubble.rst

@@ -0,0 +1,6 @@
+Sponge.Protocols.bubble
+=======================
+
+.. autoclass:: Sponge.Protocols.bubble.Bubble
+      :members:
+      :undoc-members:

src/Sponge/Protocols/catch.rst

@@ -0,0 +1,6 @@
+Sponge.Protocols.catch
+=======================
+
+.. autoclass:: Sponge.Protocols.catch.Catch
+      :members:
+      :undoc-members:

src/Sponge/Protocols/cryptography.rst

@@ -0,0 +1,6 @@
+Sponge.Protocols.cryptography
+=============================
+
+.. autoclass:: Sponge.Protocols.cryptography.CryptographyFilter
+      :members:
+      :undoc-members:

src/Sponge/Protocols/daisy.py

@@ -1,5 +1,6 @@
 from Sponge.Protocols.Yellow import Yellow
 
+# NOTE: Placeholder
 
 class Daisy(Yellow):
     """

src/Sponge/Protocols/hopper.py

@@ -8,4 +8,3 @@ class Hopper(Yellow):
     `🔗 Source <https://git.utopic.work/PierMesh/piermesh/src/branch/main/Sponge/Protocols/hopper.py>`__
     """
     pActions = ["hop", "routeHop"]
-        

src/Sponge/Protocols/hopper.rst

@@ -0,0 +1,6 @@
+Sponge.Protocols.hopper
+=======================
+
+.. autoclass:: Sponge.Protocols.hopper.Hopper
+      :members:
+      :undoc-members: